Gene : Seita.9G138500 S. italica v2.2
Defline:  (1 of 11) PTHR11254 - HECT DOMAIN UBIQUITIN-PROTEIN LIGASE Genomic Order:  1385
Name:  ? Seita.9G138500 Secondary Identifier:  ? PAC:32691095
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7511 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G138500 0.5kb upstream 0.5kb upstream 9845 true scaffold_9: 8775141-8784985 Setaria italica
Seita.9G138500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 8775141-8775640 Setaria italica
Seita.9G138500 0.5kb downstream 0.5kb downstream 9845 true scaffold_9: 8775641-8785485 Setaria italica
Seita.9G138500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 8784986-8785485 Setaria italica
Seita.9G138500 1.0kb upstream 1.0kb upstream 10345 true scaffold_9: 8774641-8784985 Setaria italica
Seita.9G138500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 8774641-8775640 Setaria italica
Seita.9G138500 1.0kb downstream 1.0kb downstream 10345 true scaffold_9: 8775641-8785985 Setaria italica
Seita.9G138500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 8784986-8785985 Setaria italica
Seita.9G138500 2.0kb upstream 2.0kb upstream 11345 true scaffold_9: 8773641-8784985 Setaria italica
Seita.9G138500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 8773641-8775640 Setaria italica
Seita.9G138500 2.0kb downstream 2.0kb downstream 11345 true scaffold_9: 8775641-8786985 Setaria italica
Seita.9G138500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 8784986-8786985 Setaria italica
Seita.9G138500 5.0kb upstream 5.0kb upstream 14345 true scaffold_9: 8770641-8784985 Setaria italica
Seita.9G138500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 8770641-8775640 Setaria italica
Seita.9G138500 5.0kb downstream 5.0kb downstream 14345 true scaffold_9: 8775641-8789985 Setaria italica
Seita.9G138500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 8784986-8789985 Setaria italica
Seita.9G138500 10.0kb upstream 10.0kb upstream 19345 true scaffold_9: 8765641-8784985 Setaria italica
Seita.9G138500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 8765641-8775640 Setaria italica
Seita.9G138500 10.0kb downstream 10.0kb downstream 19345 true scaffold_9: 8775641-8794985 Setaria italica
Seita.9G138500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 8784986-8794985 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189792 5267 Panicoideae View MSA
124581540 5269 Grass View MSA
122047566 5273 Angiosperm View MSA
123429069 5275 Viridiplantae View MSA
121351552 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.612       High
cufflinks 5.581        
cufflinks 6.293        
cufflinks 5.206        
cufflinks 4.471       Low
cufflinks 5.742        
cufflinks 5.163        
cufflinks 4.96        
cufflinks 4.795        
cufflinks 3.899       Low
cufflinks 5.92        
cufflinks 5.132        
cufflinks 6.132        
cufflinks 5.685        
cufflinks 5.542        
cufflinks 6.609       High
cufflinks 4.972        
cufflinks 7.593       High
cufflinks 4.012       Low
cufflinks 5.098        

0 Strain