Gene : Seita.9G139500 S. italica v2.2
Defline:  (1 of 1) PTHR15678:SF6 - UPF0378 PROTEIN KIAA0100 Genomic Order:  1395
Name:  ? Seita.9G139500 Secondary Identifier:  ? PAC:32688311
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G139500 0.5kb upstream 0.5kb upstream 22347 true scaffold_9: 8864350-8886696 Setaria italica
Seita.9G139500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 8886197-8886696 Setaria italica
Seita.9G139500 0.5kb downstream 0.5kb downstream 22347 true scaffold_9: 8863850-8886196 Setaria italica
Seita.9G139500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 8863850-8864349 Setaria italica
Seita.9G139500 1.0kb upstream 1.0kb upstream 22847 true scaffold_9: 8864350-8887196 Setaria italica
Seita.9G139500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 8886197-8887196 Setaria italica
Seita.9G139500 1.0kb downstream 1.0kb downstream 22847 true scaffold_9: 8863350-8886196 Setaria italica
Seita.9G139500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 8863350-8864349 Setaria italica
Seita.9G139500 2.0kb upstream 2.0kb upstream 23847 true scaffold_9: 8864350-8888196 Setaria italica
Seita.9G139500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 8886197-8888196 Setaria italica
Seita.9G139500 2.0kb downstream 2.0kb downstream 23847 true scaffold_9: 8862350-8886196 Setaria italica
Seita.9G139500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 8862350-8864349 Setaria italica
Seita.9G139500 5.0kb upstream 5.0kb upstream 26847 true scaffold_9: 8864350-8891196 Setaria italica
Seita.9G139500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 8886197-8891196 Setaria italica
Seita.9G139500 5.0kb downstream 5.0kb downstream 26847 true scaffold_9: 8859350-8886196 Setaria italica
Seita.9G139500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 8859350-8864349 Setaria italica
Seita.9G139500 10.0kb upstream 10.0kb upstream 31847 true scaffold_9: 8864350-8896196 Setaria italica
Seita.9G139500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 8886197-8896196 Setaria italica
Seita.9G139500 10.0kb downstream 10.0kb downstream 31847 true scaffold_9: 8854350-8886196 Setaria italica
Seita.9G139500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 8854350-8864349 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176248 5267 Panicoideae View MSA
124588314 5269 Grass View MSA
122044686 5273 Angiosperm View MSA
121349387 5274 Embryophyte View MSA
123381291 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.26     High High
cufflinks 10.397        
cufflinks 9.712        
cufflinks 7.333        
cufflinks 5.319        
cufflinks 9.232        
cufflinks 9.463        
cufflinks 4.956       Low
cufflinks 5.12       Low
cufflinks 4.685       Low
cufflinks 10.523        
cufflinks 5.77        
cufflinks 7.62        
cufflinks 7.867        
cufflinks 7.899        
cufflinks 13.305     High High
cufflinks 4.811       Low
cufflinks 15.829     High High
cufflinks 4.972       Low
cufflinks 5.682        

0 Strain