Gene : Seita.9G159800 S. italica v2.2
Defline:  (1 of 1) PTHR22942:SF37 - DNA REPAIR PROTEIN RECA HOMOLOG 1, CHLOROPLASTIC Genomic Order:  1598
Name:  ? Seita.9G159800 Secondary Identifier:  ? PAC:32690426
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G159800 0.5kb upstream 0.5kb upstream 5685 true scaffold_9: 10598940-10604624 Setaria italica
Seita.9G159800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 10604125-10604624 Setaria italica
Seita.9G159800 0.5kb downstream 0.5kb downstream 5685 true scaffold_9: 10598440-10604124 Setaria italica
Seita.9G159800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 10598440-10598939 Setaria italica
Seita.9G159800 1.0kb upstream 1.0kb upstream 6185 true scaffold_9: 10598940-10605124 Setaria italica
Seita.9G159800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 10604125-10605124 Setaria italica
Seita.9G159800 1.0kb downstream 1.0kb downstream 6185 true scaffold_9: 10597940-10604124 Setaria italica
Seita.9G159800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 10597940-10598939 Setaria italica
Seita.9G159800 2.0kb upstream 2.0kb upstream 7185 true scaffold_9: 10598940-10606124 Setaria italica
Seita.9G159800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 10604125-10606124 Setaria italica
Seita.9G159800 2.0kb downstream 2.0kb downstream 7185 true scaffold_9: 10596940-10604124 Setaria italica
Seita.9G159800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 10596940-10598939 Setaria italica
Seita.9G159800 5.0kb upstream 5.0kb upstream 10185 true scaffold_9: 10598940-10609124 Setaria italica
Seita.9G159800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 10604125-10609124 Setaria italica
Seita.9G159800 5.0kb downstream 5.0kb downstream 10185 true scaffold_9: 10593940-10604124 Setaria italica
Seita.9G159800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 10593940-10598939 Setaria italica
Seita.9G159800 10.0kb upstream 10.0kb upstream 15185 true scaffold_9: 10598940-10614124 Setaria italica
Seita.9G159800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 10604125-10614124 Setaria italica
Seita.9G159800 10.0kb downstream 10.0kb downstream 15185 true scaffold_9: 10588940-10604124 Setaria italica
Seita.9G159800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 10588940-10598939 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175618 5267 Panicoideae View MSA
124575595 5269 Grass View MSA
122042524 5273 Angiosperm View MSA
121345028 5274 Embryophyte View MSA
123425276 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.565        
cufflinks 1.512        
cufflinks 4.08       High
cufflinks 2.81        
cufflinks 1.811        
cufflinks 1.727        
cufflinks 2.738        
cufflinks 3.397       High
cufflinks 2.636        
cufflinks 1.32        
cufflinks 1.344        
cufflinks 1.204        
cufflinks 0.727       Low
cufflinks 4.579       High
cufflinks 1.179        
cufflinks 1.753        
cufflinks 1.492        
cufflinks 1.559        
cufflinks 2.838        
cufflinks 1.001       Low

0 Strain