Gene : Seita.9G165300 S. italica v2.2
Defline:  (1 of 2) PTHR16092 - SEC3/SYNTAXIN-RELATED Genomic Order:  1653
Name:  ? Seita.9G165300 Secondary Identifier:  ? PAC:32691266
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G165300 0.5kb upstream 0.5kb upstream 12595 true scaffold_9: 11139227-11151821 Setaria italica
Seita.9G165300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 11139227-11139726 Setaria italica
Seita.9G165300 0.5kb downstream 0.5kb downstream 12595 true scaffold_9: 11139727-11152321 Setaria italica
Seita.9G165300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 11151822-11152321 Setaria italica
Seita.9G165300 1.0kb upstream 1.0kb upstream 13095 true scaffold_9: 11138727-11151821 Setaria italica
Seita.9G165300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 11138727-11139726 Setaria italica
Seita.9G165300 1.0kb downstream 1.0kb downstream 13095 true scaffold_9: 11139727-11152821 Setaria italica
Seita.9G165300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 11151822-11152821 Setaria italica
Seita.9G165300 2.0kb upstream 2.0kb upstream 14095 true scaffold_9: 11137727-11151821 Setaria italica
Seita.9G165300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 11137727-11139726 Setaria italica
Seita.9G165300 2.0kb downstream 2.0kb downstream 14095 true scaffold_9: 11139727-11153821 Setaria italica
Seita.9G165300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 11151822-11153821 Setaria italica
Seita.9G165300 5.0kb upstream 5.0kb upstream 17095 true scaffold_9: 11134727-11151821 Setaria italica
Seita.9G165300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 11134727-11139726 Setaria italica
Seita.9G165300 5.0kb downstream 5.0kb downstream 17095 true scaffold_9: 11139727-11156821 Setaria italica
Seita.9G165300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 11151822-11156821 Setaria italica
Seita.9G165300 10.0kb upstream 10.0kb upstream 22095 true scaffold_9: 11129727-11151821 Setaria italica
Seita.9G165300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 11129727-11139726 Setaria italica
Seita.9G165300 10.0kb downstream 10.0kb downstream 22095 true scaffold_9: 11139727-11161821 Setaria italica
Seita.9G165300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 11151822-11161821 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178882 5267 Panicoideae View MSA
124577475 5269 Grass View MSA
122043094 5273 Angiosperm View MSA
121346884 5274 Embryophyte View MSA
123428518 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.287     High High
cufflinks 14.185     High  
cufflinks 11.0     High  
cufflinks 10.269        
cufflinks 8.801       Low
cufflinks 15.529     High High
cufflinks 12.594        
cufflinks 9.333        
cufflinks 10.018        
cufflinks 6.364       Low
cufflinks 13.146        
cufflinks 11.446        
cufflinks 13.553     High  
cufflinks 9.935        
cufflinks 12.89        
cufflinks 14.317     High  
cufflinks 10.269        
cufflinks 16.41     High High
cufflinks 9.394        
cufflinks 11.621        

0 Strain