Gene : Seita.9G168400 S. italica v2.2
Defline:  (1 of 1) PTHR11076:SF33 - DNA POLYMERASE KAPPA Genomic Order:  1684
Name:  ? Seita.9G168400 Secondary Identifier:  ? PAC:32689182
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G168400 0.5kb upstream 0.5kb upstream 7795 true scaffold_9: 11418844-11426638 Setaria italica
Seita.9G168400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 11426139-11426638 Setaria italica
Seita.9G168400 0.5kb downstream 0.5kb downstream 7795 true scaffold_9: 11418344-11426138 Setaria italica
Seita.9G168400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 11418344-11418843 Setaria italica
Seita.9G168400 1.0kb upstream 1.0kb upstream 8295 true scaffold_9: 11418844-11427138 Setaria italica
Seita.9G168400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 11426139-11427138 Setaria italica
Seita.9G168400 1.0kb downstream 1.0kb downstream 8295 true scaffold_9: 11417844-11426138 Setaria italica
Seita.9G168400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 11417844-11418843 Setaria italica
Seita.9G168400 2.0kb upstream 2.0kb upstream 9295 true scaffold_9: 11418844-11428138 Setaria italica
Seita.9G168400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 11426139-11428138 Setaria italica
Seita.9G168400 2.0kb downstream 2.0kb downstream 9295 true scaffold_9: 11416844-11426138 Setaria italica
Seita.9G168400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 11416844-11418843 Setaria italica
Seita.9G168400 5.0kb upstream 5.0kb upstream 12295 true scaffold_9: 11418844-11431138 Setaria italica
Seita.9G168400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 11426139-11431138 Setaria italica
Seita.9G168400 5.0kb downstream 5.0kb downstream 12295 true scaffold_9: 11413844-11426138 Setaria italica
Seita.9G168400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 11413844-11418843 Setaria italica
Seita.9G168400 10.0kb upstream 10.0kb upstream 17295 true scaffold_9: 11418844-11436138 Setaria italica
Seita.9G168400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 11426139-11436138 Setaria italica
Seita.9G168400 10.0kb downstream 10.0kb downstream 17295 true scaffold_9: 11408844-11426138 Setaria italica
Seita.9G168400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 11408844-11418843 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185703 5267 Panicoideae View MSA
124571239 5269 Grass View MSA
122043377 5273 Angiosperm View MSA
121348384 5274 Embryophyte View MSA
123428686 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.324       High
cufflinks 1.755        
cufflinks 1.438        
cufflinks 1.015       Low
cufflinks 1.022       Low
cufflinks 1.614        
cufflinks 1.487        
cufflinks 1.054       Low
cufflinks 1.159        
cufflinks 1.323        
cufflinks 1.58        
cufflinks 1.679        
cufflinks 1.45        
cufflinks 1.515        
cufflinks 1.785        
cufflinks 2.297       High
cufflinks 1.688        
cufflinks 2.98       High
cufflinks 0.796       Low
cufflinks 1.428        

0 Strain