Gene : Seita.9G092800 S. italica v2.2
Defline:  (1 of 2) PTHR10333 - INHIBITOR OF GROWTH PROTEIN Genomic Order:  928
Name:  ? Seita.9G092800 Secondary Identifier:  ? PAC:32686593
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G092800 0.5kb upstream 0.5kb upstream 4796 true scaffold_9: 5591050-5595845 Setaria italica
Seita.9G092800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 5595346-5595845 Setaria italica
Seita.9G092800 0.5kb downstream 0.5kb downstream 4796 true scaffold_9: 5590550-5595345 Setaria italica
Seita.9G092800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 5590550-5591049 Setaria italica
Seita.9G092800 1.0kb upstream 1.0kb upstream 5296 true scaffold_9: 5591050-5596345 Setaria italica
Seita.9G092800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 5595346-5596345 Setaria italica
Seita.9G092800 1.0kb downstream 1.0kb downstream 5296 true scaffold_9: 5590050-5595345 Setaria italica
Seita.9G092800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 5590050-5591049 Setaria italica
Seita.9G092800 2.0kb upstream 2.0kb upstream 6296 true scaffold_9: 5591050-5597345 Setaria italica
Seita.9G092800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 5595346-5597345 Setaria italica
Seita.9G092800 2.0kb downstream 2.0kb downstream 6296 true scaffold_9: 5589050-5595345 Setaria italica
Seita.9G092800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 5589050-5591049 Setaria italica
Seita.9G092800 5.0kb upstream 5.0kb upstream 9296 true scaffold_9: 5591050-5600345 Setaria italica
Seita.9G092800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 5595346-5600345 Setaria italica
Seita.9G092800 5.0kb downstream 5.0kb downstream 9296 true scaffold_9: 5586050-5595345 Setaria italica
Seita.9G092800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 5586050-5591049 Setaria italica
Seita.9G092800 10.0kb upstream 10.0kb upstream 14296 true scaffold_9: 5591050-5605345 Setaria italica
Seita.9G092800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 5595346-5605345 Setaria italica
Seita.9G092800 10.0kb downstream 10.0kb downstream 14296 true scaffold_9: 5581050-5595345 Setaria italica
Seita.9G092800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 5581050-5591049 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184283 5267 Panicoideae View MSA
124580400 5269 Grass View MSA
122043468 5273 Angiosperm View MSA
121347114 5274 Embryophyte View MSA
123426604 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.514       High
cufflinks 3.543       High
cufflinks 1.828       Low
cufflinks 1.51       Low
cufflinks 1.636       Low
cufflinks 3.178        
cufflinks 2.445        
cufflinks 2.778        
cufflinks 2.065        
cufflinks 3.203        
cufflinks 3.052        
cufflinks 2.843        
cufflinks 2.217        
cufflinks 2.008        
cufflinks 3.549       High
cufflinks 2.79        
cufflinks 3.32        
cufflinks 3.059        
cufflinks 1.779       Low
cufflinks 2.653        

0 Strain