Gene : Seita.9G096000 S. italica v2.2
Defline:  (1 of 1) PTHR22811:SF31 - RE49489P Genomic Order:  960
Name:  ? Seita.9G096000 Secondary Identifier:  ? PAC:32690959
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G096000 0.5kb upstream 0.5kb upstream 3412 true scaffold_9: 5752453-5755864 Setaria italica
Seita.9G096000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 5752453-5752952 Setaria italica
Seita.9G096000 0.5kb downstream 0.5kb downstream 3412 true scaffold_9: 5752953-5756364 Setaria italica
Seita.9G096000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 5755865-5756364 Setaria italica
Seita.9G096000 1.0kb upstream 1.0kb upstream 3912 true scaffold_9: 5751953-5755864 Setaria italica
Seita.9G096000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 5751953-5752952 Setaria italica
Seita.9G096000 1.0kb downstream 1.0kb downstream 3912 true scaffold_9: 5752953-5756864 Setaria italica
Seita.9G096000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 5755865-5756864 Setaria italica
Seita.9G096000 2.0kb upstream 2.0kb upstream 4912 true scaffold_9: 5750953-5755864 Setaria italica
Seita.9G096000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 5750953-5752952 Setaria italica
Seita.9G096000 2.0kb downstream 2.0kb downstream 4912 true scaffold_9: 5752953-5757864 Setaria italica
Seita.9G096000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 5755865-5757864 Setaria italica
Seita.9G096000 5.0kb upstream 5.0kb upstream 7912 true scaffold_9: 5747953-5755864 Setaria italica
Seita.9G096000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 5747953-5752952 Setaria italica
Seita.9G096000 5.0kb downstream 5.0kb downstream 7912 true scaffold_9: 5752953-5760864 Setaria italica
Seita.9G096000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 5755865-5760864 Setaria italica
Seita.9G096000 10.0kb upstream 10.0kb upstream 12912 true scaffold_9: 5742953-5755864 Setaria italica
Seita.9G096000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 5742953-5752952 Setaria italica
Seita.9G096000 10.0kb downstream 10.0kb downstream 12912 true scaffold_9: 5752953-5765864 Setaria italica
Seita.9G096000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 5755865-5765864 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179351 5267 Panicoideae View MSA
124574787 5269 Grass View MSA
122044870 5273 Angiosperm View MSA
121348336 5274 Embryophyte View MSA
123427292 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.462     High  
cufflinks 18.74     High  
cufflinks 18.086     High  
cufflinks 23.775     High  
cufflinks 17.974     High  
cufflinks 18.024     High  
cufflinks 16.759     High Low
cufflinks 21.714     High  
cufflinks 16.004     High Low
cufflinks 37.778     High High
cufflinks 19.175     High  
cufflinks 21.338     High  
cufflinks 20.261     High  
cufflinks 16.626     High Low
cufflinks 21.625     High  
cufflinks 21.126     High  
cufflinks 24.394     High  
cufflinks 26.692     High High
cufflinks 17.261     High  
cufflinks 24.0     High  

0 Strain