Gene : Seita.9G096300 S. italica v2.2
Defline:  (1 of 4) PTHR21713 - NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED Genomic Order:  963
Name:  ? Seita.9G096300 Secondary Identifier:  ? PAC:32690506
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G096300 0.5kb upstream 0.5kb upstream 3540 true scaffold_9: 5772714-5776253 Setaria italica
Seita.9G096300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 5775754-5776253 Setaria italica
Seita.9G096300 0.5kb downstream 0.5kb downstream 3540 true scaffold_9: 5772214-5775753 Setaria italica
Seita.9G096300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 5772214-5772713 Setaria italica
Seita.9G096300 1.0kb upstream 1.0kb upstream 4040 true scaffold_9: 5772714-5776753 Setaria italica
Seita.9G096300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 5775754-5776753 Setaria italica
Seita.9G096300 1.0kb downstream 1.0kb downstream 4040 true scaffold_9: 5771714-5775753 Setaria italica
Seita.9G096300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 5771714-5772713 Setaria italica
Seita.9G096300 2.0kb upstream 2.0kb upstream 5040 true scaffold_9: 5772714-5777753 Setaria italica
Seita.9G096300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 5775754-5777753 Setaria italica
Seita.9G096300 2.0kb downstream 2.0kb downstream 5040 true scaffold_9: 5770714-5775753 Setaria italica
Seita.9G096300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 5770714-5772713 Setaria italica
Seita.9G096300 5.0kb upstream 5.0kb upstream 8040 true scaffold_9: 5772714-5780753 Setaria italica
Seita.9G096300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 5775754-5780753 Setaria italica
Seita.9G096300 5.0kb downstream 5.0kb downstream 8040 true scaffold_9: 5767714-5775753 Setaria italica
Seita.9G096300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 5767714-5772713 Setaria italica
Seita.9G096300 10.0kb upstream 10.0kb upstream 13040 true scaffold_9: 5772714-5785753 Setaria italica
Seita.9G096300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 5775754-5785753 Setaria italica
Seita.9G096300 10.0kb downstream 10.0kb downstream 13040 true scaffold_9: 5762714-5775753 Setaria italica
Seita.9G096300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 5762714-5772713 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188305 5267 Panicoideae View MSA
124588662 5269 Grass View MSA
122043596 5273 Angiosperm View MSA
121351312 5274 Embryophyte View MSA
123424753 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.737     High  
cufflinks 38.554     High  
cufflinks 17.762     High Low
cufflinks 13.026     High Low
cufflinks 16.504     High Low
cufflinks 43.693     High High
cufflinks 25.449     High  
cufflinks 39.964     High  
cufflinks 29.174     High  
cufflinks 34.875     High  
cufflinks 31.792     High  
cufflinks 34.205     High  
cufflinks 26.022     High  
cufflinks 24.081     High  
cufflinks 42.365     High High
cufflinks 16.422     High Low
cufflinks 49.303     High High
cufflinks 21.446     High  
cufflinks 18.562     High Low
cufflinks 43.522     High High

0 Strain