Gene : Seita.9G098200 S. italica v2.2
Defline:  (1 of 2) PTHR12565//PTHR12565:SF164 - STEROL REGULATORY ELEMENT-BINDING PROTEIN Genomic Order:  982
Name:  ? Seita.9G098200 Secondary Identifier:  ? PAC:32689265
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G098200 0.5kb upstream 0.5kb upstream 8008 true scaffold_9: 5921658-5929665 Setaria italica
Seita.9G098200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 5929166-5929665 Setaria italica
Seita.9G098200 0.5kb downstream 0.5kb downstream 8008 true scaffold_9: 5921158-5929165 Setaria italica
Seita.9G098200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 5921158-5921657 Setaria italica
Seita.9G098200 1.0kb upstream 1.0kb upstream 8508 true scaffold_9: 5921658-5930165 Setaria italica
Seita.9G098200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 5929166-5930165 Setaria italica
Seita.9G098200 1.0kb downstream 1.0kb downstream 8508 true scaffold_9: 5920658-5929165 Setaria italica
Seita.9G098200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 5920658-5921657 Setaria italica
Seita.9G098200 2.0kb upstream 2.0kb upstream 9508 true scaffold_9: 5921658-5931165 Setaria italica
Seita.9G098200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 5929166-5931165 Setaria italica
Seita.9G098200 2.0kb downstream 2.0kb downstream 9508 true scaffold_9: 5919658-5929165 Setaria italica
Seita.9G098200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 5919658-5921657 Setaria italica
Seita.9G098200 5.0kb upstream 5.0kb upstream 12508 true scaffold_9: 5921658-5934165 Setaria italica
Seita.9G098200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 5929166-5934165 Setaria italica
Seita.9G098200 5.0kb downstream 5.0kb downstream 12508 true scaffold_9: 5916658-5929165 Setaria italica
Seita.9G098200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 5916658-5921657 Setaria italica
Seita.9G098200 10.0kb upstream 10.0kb upstream 17508 true scaffold_9: 5921658-5939165 Setaria italica
Seita.9G098200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 5929166-5939165 Setaria italica
Seita.9G098200 10.0kb downstream 10.0kb downstream 17508 true scaffold_9: 5911658-5929165 Setaria italica
Seita.9G098200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 5911658-5921657 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185142 5267 Panicoideae View MSA
124586763 5269 Grass View MSA
122043534 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.565        
cufflinks 0.208       Low
cufflinks 0.441        
cufflinks 1.655        
cufflinks 9.571       High
cufflinks 0.101     Low Low
cufflinks 10.541       High
cufflinks 0.811        
cufflinks 17.851     High High
cufflinks 1.587        
cufflinks 1.35        
cufflinks 1.487        
cufflinks 0.615        
cufflinks 6.809       High
cufflinks 1.758        
cufflinks 0.129       Low
cufflinks 0.644        
cufflinks 0.162       Low
cufflinks 1.539        
cufflinks 2.641        

0 Strain