Gene : Seita.9G098500 S. italica v2.2
Defline:  (1 of 1) PTHR12072:SF5 - CWF19-LIKE PROTEIN 2 Genomic Order:  985
Name:  ? Seita.9G098500 Secondary Identifier:  ? PAC:32688080
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G098500 0.5kb upstream 0.5kb upstream 4477 true scaffold_9: 5941037-5945513 Setaria italica
Seita.9G098500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 5945014-5945513 Setaria italica
Seita.9G098500 0.5kb downstream 0.5kb downstream 4477 true scaffold_9: 5940537-5945013 Setaria italica
Seita.9G098500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 5940537-5941036 Setaria italica
Seita.9G098500 1.0kb upstream 1.0kb upstream 4977 true scaffold_9: 5941037-5946013 Setaria italica
Seita.9G098500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 5945014-5946013 Setaria italica
Seita.9G098500 1.0kb downstream 1.0kb downstream 4977 true scaffold_9: 5940037-5945013 Setaria italica
Seita.9G098500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 5940037-5941036 Setaria italica
Seita.9G098500 2.0kb upstream 2.0kb upstream 5977 true scaffold_9: 5941037-5947013 Setaria italica
Seita.9G098500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 5945014-5947013 Setaria italica
Seita.9G098500 2.0kb downstream 2.0kb downstream 5977 true scaffold_9: 5939037-5945013 Setaria italica
Seita.9G098500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 5939037-5941036 Setaria italica
Seita.9G098500 5.0kb upstream 5.0kb upstream 8977 true scaffold_9: 5941037-5950013 Setaria italica
Seita.9G098500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 5945014-5950013 Setaria italica
Seita.9G098500 5.0kb downstream 5.0kb downstream 8977 true scaffold_9: 5936037-5945013 Setaria italica
Seita.9G098500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 5936037-5941036 Setaria italica
Seita.9G098500 10.0kb upstream 10.0kb upstream 13977 true scaffold_9: 5941037-5955013 Setaria italica
Seita.9G098500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 5945014-5955013 Setaria italica
Seita.9G098500 10.0kb downstream 10.0kb downstream 13977 true scaffold_9: 5931037-5945013 Setaria italica
Seita.9G098500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 5931037-5941036 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177735 5267 Panicoideae View MSA
124572789 5269 Grass View MSA
122046220 5273 Angiosperm View MSA
121347748 5274 Embryophyte View MSA
123426181 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.331     High High
cufflinks 17.552     High  
cufflinks 12.221     High  
cufflinks 13.236     High  
cufflinks 12.858     High  
cufflinks 17.548     High  
cufflinks 15.035     High  
cufflinks 11.158       Low
cufflinks 13.931     High  
cufflinks 7.529       Low
cufflinks 15.121     High  
cufflinks 21.389     High High
cufflinks 13.65     High  
cufflinks 13.607        
cufflinks 16.884     High  
cufflinks 18.267     High  
cufflinks 18.928     High  
cufflinks 23.478     High High
cufflinks 11.021       Low
cufflinks 15.164     High  

0 Strain