Gene : Seita.9G098800 S. italica v2.2
Defline:  (1 of 1) PTHR11700:SF7 - 40S RIBOSOMAL PROTEIN S10, MITOCHONDRIAL Genomic Order:  988
Name:  ? Seita.9G098800 Secondary Identifier:  ? PAC:32689029
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G098800 0.5kb upstream 0.5kb upstream 2668 true scaffold_9: 5963698-5966365 Setaria italica
Seita.9G098800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 5963698-5964197 Setaria italica
Seita.9G098800 0.5kb downstream 0.5kb downstream 2668 true scaffold_9: 5964198-5966865 Setaria italica
Seita.9G098800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 5966366-5966865 Setaria italica
Seita.9G098800 1.0kb upstream 1.0kb upstream 3168 true scaffold_9: 5963198-5966365 Setaria italica
Seita.9G098800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 5963198-5964197 Setaria italica
Seita.9G098800 1.0kb downstream 1.0kb downstream 3168 true scaffold_9: 5964198-5967365 Setaria italica
Seita.9G098800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 5966366-5967365 Setaria italica
Seita.9G098800 2.0kb upstream 2.0kb upstream 4168 true scaffold_9: 5962198-5966365 Setaria italica
Seita.9G098800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 5962198-5964197 Setaria italica
Seita.9G098800 2.0kb downstream 2.0kb downstream 4168 true scaffold_9: 5964198-5968365 Setaria italica
Seita.9G098800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 5966366-5968365 Setaria italica
Seita.9G098800 5.0kb upstream 5.0kb upstream 7168 true scaffold_9: 5959198-5966365 Setaria italica
Seita.9G098800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 5959198-5964197 Setaria italica
Seita.9G098800 5.0kb downstream 5.0kb downstream 7168 true scaffold_9: 5964198-5971365 Setaria italica
Seita.9G098800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 5966366-5971365 Setaria italica
Seita.9G098800 10.0kb upstream 10.0kb upstream 12168 true scaffold_9: 5954198-5966365 Setaria italica
Seita.9G098800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 5954198-5964197 Setaria italica
Seita.9G098800 10.0kb downstream 10.0kb downstream 12168 true scaffold_9: 5964198-5976365 Setaria italica
Seita.9G098800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 5966366-5976365 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028495 5273 Angiosperm View MSA
122199151 5267 Panicoideae View MSA
124589014 5269 Grass View MSA
121348119 5274 Embryophyte View MSA
123380732 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.16       Low
cufflinks 12.922        
cufflinks 11.199     High  
cufflinks 13.363     High  
cufflinks 11.169     High  
cufflinks 13.359     High  
cufflinks 10.751        
cufflinks 17.896     High High
cufflinks 15.618     High High
cufflinks 14.129        
cufflinks 11.84        
cufflinks 12.823        
cufflinks 15.399     High High
cufflinks 10.083       Low
cufflinks 13.235        
cufflinks 9.791       Low
cufflinks 16.839     High High
cufflinks 9.814       Low
cufflinks 11.577     High  
cufflinks 15.441     High High

0 Strain