Gene : Seita.9G099700 S. italica v2.2
Defline:  (1 of 1) PTHR11680:SF10 - SERINE HYDROXYMETHYLTRANSFERASE 1, MITOCHONDRIAL Genomic Order:  997
Name:  ? Seita.9G099700 Secondary Identifier:  ? PAC:32689289
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica GLYSYN-PWY Setaria italica pathologic  
Sitalica PWY-2161 Setaria italica pathologic  
Sitalica PWY-3841 Setaria italica pathologic  
Sitalica SER-GLYSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G099700 0.5kb upstream 0.5kb upstream 4746 true scaffold_9: 6030112-6034857 Setaria italica
Seita.9G099700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 6034358-6034857 Setaria italica
Seita.9G099700 0.5kb downstream 0.5kb downstream 4746 true scaffold_9: 6029612-6034357 Setaria italica
Seita.9G099700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 6029612-6030111 Setaria italica
Seita.9G099700 1.0kb upstream 1.0kb upstream 5246 true scaffold_9: 6030112-6035357 Setaria italica
Seita.9G099700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 6034358-6035357 Setaria italica
Seita.9G099700 1.0kb downstream 1.0kb downstream 5246 true scaffold_9: 6029112-6034357 Setaria italica
Seita.9G099700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 6029112-6030111 Setaria italica
Seita.9G099700 2.0kb upstream 2.0kb upstream 6246 true scaffold_9: 6030112-6036357 Setaria italica
Seita.9G099700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 6034358-6036357 Setaria italica
Seita.9G099700 2.0kb downstream 2.0kb downstream 6246 true scaffold_9: 6028112-6034357 Setaria italica
Seita.9G099700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 6028112-6030111 Setaria italica
Seita.9G099700 5.0kb upstream 5.0kb upstream 9246 true scaffold_9: 6030112-6039357 Setaria italica
Seita.9G099700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 6034358-6039357 Setaria italica
Seita.9G099700 5.0kb downstream 5.0kb downstream 9246 true scaffold_9: 6025112-6034357 Setaria italica
Seita.9G099700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 6025112-6030111 Setaria italica
Seita.9G099700 10.0kb upstream 10.0kb upstream 14246 true scaffold_9: 6030112-6044357 Setaria italica
Seita.9G099700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 6034358-6044357 Setaria italica
Seita.9G099700 10.0kb downstream 10.0kb downstream 14246 true scaffold_9: 6020112-6034357 Setaria italica
Seita.9G099700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 6020112-6030111 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187926 5267 Panicoideae View MSA
124570013 5269 Grass View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.464        
cufflinks 14.502     High  
cufflinks 31.776     High High
cufflinks 33.321     High High
cufflinks 27.579     High  
cufflinks 14.936     High  
cufflinks 18.067     High  
cufflinks 23.803     High  
cufflinks 18.908     High  
cufflinks 6.152       Low
cufflinks 7.726       Low
cufflinks 9.949        
cufflinks 14.655     High  
cufflinks 17.701     High  
cufflinks 14.063        
cufflinks 21.675     High  
cufflinks 10.235        
cufflinks 3.333       Low
cufflinks 38.082     High High
cufflinks 16.603     High  

0 Strain