Gene : Seita.9G099400 S. italica v2.2
Defline:  (1 of 29) PF03000 - NPH3 family (NPH3) Genomic Order:  994
Name:  ? Seita.9G099400 Secondary Identifier:  ? PAC:32692120
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G099400 0.5kb upstream 0.5kb upstream 3811 true scaffold_9: 6016169-6019979 Setaria italica
Seita.9G099400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 6019480-6019979 Setaria italica
Seita.9G099400 0.5kb downstream 0.5kb downstream 3811 true scaffold_9: 6015669-6019479 Setaria italica
Seita.9G099400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 6015669-6016168 Setaria italica
Seita.9G099400 1.0kb upstream 1.0kb upstream 4311 true scaffold_9: 6016169-6020479 Setaria italica
Seita.9G099400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 6019480-6020479 Setaria italica
Seita.9G099400 1.0kb downstream 1.0kb downstream 4311 true scaffold_9: 6015169-6019479 Setaria italica
Seita.9G099400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 6015169-6016168 Setaria italica
Seita.9G099400 2.0kb upstream 2.0kb upstream 5311 true scaffold_9: 6016169-6021479 Setaria italica
Seita.9G099400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 6019480-6021479 Setaria italica
Seita.9G099400 2.0kb downstream 2.0kb downstream 5311 true scaffold_9: 6014169-6019479 Setaria italica
Seita.9G099400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 6014169-6016168 Setaria italica
Seita.9G099400 5.0kb upstream 5.0kb upstream 8311 true scaffold_9: 6016169-6024479 Setaria italica
Seita.9G099400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 6019480-6024479 Setaria italica
Seita.9G099400 5.0kb downstream 5.0kb downstream 8311 true scaffold_9: 6011169-6019479 Setaria italica
Seita.9G099400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 6011169-6016168 Setaria italica
Seita.9G099400 10.0kb upstream 10.0kb upstream 13311 true scaffold_9: 6016169-6029479 Setaria italica
Seita.9G099400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 6019480-6029479 Setaria italica
Seita.9G099400 10.0kb downstream 10.0kb downstream 13311 true scaffold_9: 6006169-6019479 Setaria italica
Seita.9G099400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 6006169-6016168 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179284 5267 Panicoideae View MSA
124584062 5269 Grass View MSA
122048903 5273 Angiosperm View MSA
121311163 5274 Embryophyte View MSA
123348497 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.53        
cufflinks 4.139       High
cufflinks 1.443        
cufflinks 3.316        
cufflinks 3.52        
cufflinks 4.931       High
cufflinks 3.302        
cufflinks 3.644       High
cufflinks 2.808        
cufflinks 2.595        
cufflinks 1.813        
cufflinks 0.839       Low
cufflinks 1.492        
cufflinks 1.779        
cufflinks 1.269        
cufflinks 1.285        
cufflinks 1.076       Low
cufflinks 0.604       Low
cufflinks 4.015       High
cufflinks 1.461        

0 Strain