Gene : Seita.9G105900 S. italica v2.2
Defline:  (1 of 2) PF05479 - Photosystem I reaction centre subunit N (PSAN or PSI-N) (PsaN) Genomic Order:  1059
Name:  ? Seita.9G105900 Secondary Identifier:  ? PAC:32691405
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G105900 0.5kb upstream 0.5kb upstream 2053 true scaffold_9: 6395812-6397864 Setaria italica
Seita.9G105900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 6397365-6397864 Setaria italica
Seita.9G105900 0.5kb downstream 0.5kb downstream 2053 true scaffold_9: 6395312-6397364 Setaria italica
Seita.9G105900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 6395312-6395811 Setaria italica
Seita.9G105900 1.0kb upstream 1.0kb upstream 2553 true scaffold_9: 6395812-6398364 Setaria italica
Seita.9G105900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 6397365-6398364 Setaria italica
Seita.9G105900 1.0kb downstream 1.0kb downstream 2553 true scaffold_9: 6394812-6397364 Setaria italica
Seita.9G105900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 6394812-6395811 Setaria italica
Seita.9G105900 2.0kb upstream 2.0kb upstream 3553 true scaffold_9: 6395812-6399364 Setaria italica
Seita.9G105900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 6397365-6399364 Setaria italica
Seita.9G105900 2.0kb downstream 2.0kb downstream 3553 true scaffold_9: 6393812-6397364 Setaria italica
Seita.9G105900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 6393812-6395811 Setaria italica
Seita.9G105900 5.0kb upstream 5.0kb upstream 6553 true scaffold_9: 6395812-6402364 Setaria italica
Seita.9G105900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 6397365-6402364 Setaria italica
Seita.9G105900 5.0kb downstream 5.0kb downstream 6553 true scaffold_9: 6390812-6397364 Setaria italica
Seita.9G105900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 6390812-6395811 Setaria italica
Seita.9G105900 10.0kb upstream 10.0kb upstream 11553 true scaffold_9: 6395812-6407364 Setaria italica
Seita.9G105900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 6397365-6407364 Setaria italica
Seita.9G105900 10.0kb downstream 10.0kb downstream 11553 true scaffold_9: 6385812-6397364 Setaria italica
Seita.9G105900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 6385812-6395811 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181318 5267 Panicoideae View MSA
124583609 5269 Grass View MSA
122050730 5273 Angiosperm View MSA
121348092 5274 Embryophyte View MSA
123425572 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.114        
cufflinks 6.541        
cufflinks 16.139     High  
cufflinks 14.987     High  
cufflinks 20.487     High  
cufflinks 5.14        
cufflinks 20.426     High  
cufflinks 25.122     High High
cufflinks 29.716     High High
cufflinks 1.138        
cufflinks 2.943        
cufflinks 0.17       Low
cufflinks 0.342       Low
cufflinks 14.883     High  
cufflinks 0.131       Low
cufflinks 15.794     High  
cufflinks 0.122     Low Low
cufflinks 4.225        
cufflinks 12.148     High  
cufflinks 0.278       Low

0 Strain