Gene : Seita.9G108500 S. italica v2.2
Defline:  (1 of 1) PTHR23308:SF34 - F16B3.3 PROTEIN Genomic Order:  1085
Name:  ? Seita.9G108500 Secondary Identifier:  ? PAC:32689620
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G108500 0.5kb upstream 0.5kb upstream 4266 true scaffold_9: 6582507-6586772 Setaria italica
Seita.9G108500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 6586273-6586772 Setaria italica
Seita.9G108500 0.5kb downstream 0.5kb downstream 4266 true scaffold_9: 6582007-6586272 Setaria italica
Seita.9G108500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 6582007-6582506 Setaria italica
Seita.9G108500 1.0kb upstream 1.0kb upstream 4766 true scaffold_9: 6582507-6587272 Setaria italica
Seita.9G108500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 6586273-6587272 Setaria italica
Seita.9G108500 1.0kb downstream 1.0kb downstream 4766 true scaffold_9: 6581507-6586272 Setaria italica
Seita.9G108500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 6581507-6582506 Setaria italica
Seita.9G108500 2.0kb upstream 2.0kb upstream 5766 true scaffold_9: 6582507-6588272 Setaria italica
Seita.9G108500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 6586273-6588272 Setaria italica
Seita.9G108500 2.0kb downstream 2.0kb downstream 5766 true scaffold_9: 6580507-6586272 Setaria italica
Seita.9G108500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 6580507-6582506 Setaria italica
Seita.9G108500 5.0kb upstream 5.0kb upstream 8766 true scaffold_9: 6582507-6591272 Setaria italica
Seita.9G108500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 6586273-6591272 Setaria italica
Seita.9G108500 5.0kb downstream 5.0kb downstream 8766 true scaffold_9: 6577507-6586272 Setaria italica
Seita.9G108500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 6577507-6582506 Setaria italica
Seita.9G108500 10.0kb upstream 10.0kb upstream 13766 true scaffold_9: 6582507-6596272 Setaria italica
Seita.9G108500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 6586273-6596272 Setaria italica
Seita.9G108500 10.0kb downstream 10.0kb downstream 13766 true scaffold_9: 6572507-6586272 Setaria italica
Seita.9G108500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 6572507-6582506 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182433 5267 Panicoideae View MSA
124589543 5269 Grass View MSA
122045754 5273 Angiosperm View MSA
121310497 5274 Embryophyte View MSA
123427201 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.689        
cufflinks 3.749       High
cufflinks 0.516        
cufflinks 0.343       Low
cufflinks 0.321       Low
cufflinks 3.092       High
cufflinks 2.062        
cufflinks 2.486        
cufflinks 1.361        
cufflinks 0.769        
cufflinks 1.84        
cufflinks 1.6        
cufflinks 0.488        
cufflinks 0.551        
cufflinks 2.42        
cufflinks 0.728        
cufflinks 2.717       High
cufflinks 0.759        
cufflinks 0.264       Low
cufflinks 2.21        

0 Strain