Gene : Seita.9G115000 S. italica v2.2
Defline:  (1 of 1) PTHR21320:SF3 - CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX11, MITOCHONDRIAL Genomic Order:  1150
Name:  ? Seita.9G115000 Secondary Identifier:  ? PAC:32691799
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G115000 0.5kb upstream 0.5kb upstream 4376 true scaffold_9: 7122101-7126476 Setaria italica
Seita.9G115000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 7122101-7122600 Setaria italica
Seita.9G115000 0.5kb downstream 0.5kb downstream 4376 true scaffold_9: 7122601-7126976 Setaria italica
Seita.9G115000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 7126477-7126976 Setaria italica
Seita.9G115000 1.0kb upstream 1.0kb upstream 4876 true scaffold_9: 7121601-7126476 Setaria italica
Seita.9G115000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 7121601-7122600 Setaria italica
Seita.9G115000 1.0kb downstream 1.0kb downstream 4876 true scaffold_9: 7122601-7127476 Setaria italica
Seita.9G115000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 7126477-7127476 Setaria italica
Seita.9G115000 2.0kb upstream 2.0kb upstream 5876 true scaffold_9: 7120601-7126476 Setaria italica
Seita.9G115000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 7120601-7122600 Setaria italica
Seita.9G115000 2.0kb downstream 2.0kb downstream 5876 true scaffold_9: 7122601-7128476 Setaria italica
Seita.9G115000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 7126477-7128476 Setaria italica
Seita.9G115000 5.0kb upstream 5.0kb upstream 8876 true scaffold_9: 7117601-7126476 Setaria italica
Seita.9G115000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 7117601-7122600 Setaria italica
Seita.9G115000 5.0kb downstream 5.0kb downstream 8876 true scaffold_9: 7122601-7131476 Setaria italica
Seita.9G115000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 7126477-7131476 Setaria italica
Seita.9G115000 10.0kb upstream 10.0kb upstream 13876 true scaffold_9: 7112601-7126476 Setaria italica
Seita.9G115000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 7112601-7122600 Setaria italica
Seita.9G115000 10.0kb downstream 10.0kb downstream 13876 true scaffold_9: 7122601-7136476 Setaria italica
Seita.9G115000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 7126477-7136476 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178473 5267 Panicoideae View MSA
124573150 5269 Grass View MSA
122044344 5273 Angiosperm View MSA
121347524 5274 Embryophyte View MSA
123425070 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.855        
cufflinks 2.487        
cufflinks 1.288       Low
cufflinks 1.35       Low
cufflinks 1.487       Low
cufflinks 2.975        
cufflinks 1.904        
cufflinks 4.636       High
cufflinks 3.226        
cufflinks 4.891       High
cufflinks 2.465        
cufflinks 4.147       High
cufflinks 2.899        
cufflinks 2.532        
cufflinks 2.785        
cufflinks 1.997        
cufflinks 5.149       High
cufflinks 1.882        
cufflinks 1.792        
cufflinks 3.883        

0 Strain