Gene : Seita.9G117800 S. italica v2.2
Defline:  (1 of 1) PTHR11615:SF115 - NADH-UBIQUINONE OXIDOREDUCTASE 75 KDA SUBUNIT, MITOCHONDRIAL Genomic Order:  1178
Name:  ? Seita.9G117800 Secondary Identifier:  ? PAC:32690522
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3781 Setaria italica pathologic  
Sitalica PWY-4302 Setaria italica pathologic  
Sitalica PWY-5083 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G117800 0.5kb upstream 0.5kb upstream 4362 true scaffold_9: 7297482-7301843 Setaria italica
Seita.9G117800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 7297482-7297981 Setaria italica
Seita.9G117800 0.5kb downstream 0.5kb downstream 4362 true scaffold_9: 7297982-7302343 Setaria italica
Seita.9G117800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 7301844-7302343 Setaria italica
Seita.9G117800 1.0kb upstream 1.0kb upstream 4862 true scaffold_9: 7296982-7301843 Setaria italica
Seita.9G117800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 7296982-7297981 Setaria italica
Seita.9G117800 1.0kb downstream 1.0kb downstream 4862 true scaffold_9: 7297982-7302843 Setaria italica
Seita.9G117800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 7301844-7302843 Setaria italica
Seita.9G117800 2.0kb upstream 2.0kb upstream 5862 true scaffold_9: 7295982-7301843 Setaria italica
Seita.9G117800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 7295982-7297981 Setaria italica
Seita.9G117800 2.0kb downstream 2.0kb downstream 5862 true scaffold_9: 7297982-7303843 Setaria italica
Seita.9G117800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 7301844-7303843 Setaria italica
Seita.9G117800 5.0kb upstream 5.0kb upstream 8862 true scaffold_9: 7292982-7301843 Setaria italica
Seita.9G117800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 7292982-7297981 Setaria italica
Seita.9G117800 5.0kb downstream 5.0kb downstream 8862 true scaffold_9: 7297982-7306843 Setaria italica
Seita.9G117800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 7301844-7306843 Setaria italica
Seita.9G117800 10.0kb upstream 10.0kb upstream 13862 true scaffold_9: 7287982-7301843 Setaria italica
Seita.9G117800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 7287982-7297981 Setaria italica
Seita.9G117800 10.0kb downstream 10.0kb downstream 13862 true scaffold_9: 7297982-7311843 Setaria italica
Seita.9G117800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 7301844-7311843 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187508 5267 Panicoideae View MSA
124571423 5269 Grass View MSA
122044121 5273 Angiosperm View MSA
121350903 5274 Embryophyte View MSA
123424434 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 80.781     High  
cufflinks 70.73     High  
cufflinks 48.178     High Low
cufflinks 49.833     High Low
cufflinks 59.002     High  
cufflinks 70.177     High  
cufflinks 59.396     High  
cufflinks 68.857     High  
cufflinks 69.112     High  
cufflinks 77.187     High  
cufflinks 90.89     High High
cufflinks 89.371     High  
cufflinks 86.007     High  
cufflinks 42.835     High Low
cufflinks 85.388     High  
cufflinks 45.035     High Low
cufflinks 100.148     High High
cufflinks 42.636     High Low
cufflinks 51.921     High  
cufflinks 107.494     High High

0 Strain