Gene : Seita.9G121800 S. italica v2.2
Defline:  (1 of 1) PTHR11387:SF17 - CYTOCHROME C OXIDASE SUBUNIT 6B-LIKE-RELATED Genomic Order:  1218
Name:  ? Seita.9G121800 Secondary Identifier:  ? PAC:32691201
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3781 Setaria italica pathologic  
Sitalica PWY-7279 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G121800 0.5kb upstream 0.5kb upstream 885 true scaffold_9: 7548328-7549212 Setaria italica
Seita.9G121800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 7548328-7548827 Setaria italica
Seita.9G121800 0.5kb downstream 0.5kb downstream 885 true scaffold_9: 7548828-7549712 Setaria italica
Seita.9G121800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 7549213-7549712 Setaria italica
Seita.9G121800 1.0kb upstream 1.0kb upstream 1385 true scaffold_9: 7547828-7549212 Setaria italica
Seita.9G121800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 7547828-7548827 Setaria italica
Seita.9G121800 1.0kb downstream 1.0kb downstream 1385 true scaffold_9: 7548828-7550212 Setaria italica
Seita.9G121800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 7549213-7550212 Setaria italica
Seita.9G121800 2.0kb upstream 2.0kb upstream 2385 true scaffold_9: 7546828-7549212 Setaria italica
Seita.9G121800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 7546828-7548827 Setaria italica
Seita.9G121800 2.0kb downstream 2.0kb downstream 2385 true scaffold_9: 7548828-7551212 Setaria italica
Seita.9G121800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 7549213-7551212 Setaria italica
Seita.9G121800 5.0kb upstream 5.0kb upstream 5385 true scaffold_9: 7543828-7549212 Setaria italica
Seita.9G121800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 7543828-7548827 Setaria italica
Seita.9G121800 5.0kb downstream 5.0kb downstream 5385 true scaffold_9: 7548828-7554212 Setaria italica
Seita.9G121800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 7549213-7554212 Setaria italica
Seita.9G121800 10.0kb upstream 10.0kb upstream 10385 true scaffold_9: 7538828-7549212 Setaria italica
Seita.9G121800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 7538828-7548827 Setaria italica
Seita.9G121800 10.0kb downstream 10.0kb downstream 10385 true scaffold_9: 7548828-7559212 Setaria italica
Seita.9G121800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 7549213-7559212 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122055592 5267 Panicoideae Singleton cluster - no MSA
124590992 5269 Grass View MSA
122050829 5273 Angiosperm View MSA
121351047 5274 Embryophyte View MSA
123424784 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.065     Low  
cufflinks 0.071     Low  
cufflinks 0.09        
cufflinks 0.049     Low  
cufflinks 0.041     Low Low
cufflinks 0.188       High
cufflinks 0.042     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.158       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.051     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain