Gene : Seita.9G123600 S. italica v2.2
Defline:  (1 of 1) PTHR23086:SF33 - PHOSPHATIDYLINOSITOL 4-PHOSPHATE 5-KINASE 1-RELATED Genomic Order:  1236
Name:  ? Seita.9G123600 Secondary Identifier:  ? PAC:32689097
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6351 Setaria italica pathologic  
Sitalica PWY-6352 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G123600 0.5kb upstream 0.5kb upstream 5107 true scaffold_9: 7713700-7718806 Setaria italica
Seita.9G123600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 7713700-7714199 Setaria italica
Seita.9G123600 0.5kb downstream 0.5kb downstream 5107 true scaffold_9: 7714200-7719306 Setaria italica
Seita.9G123600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 7718807-7719306 Setaria italica
Seita.9G123600 1.0kb upstream 1.0kb upstream 5607 true scaffold_9: 7713200-7718806 Setaria italica
Seita.9G123600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 7713200-7714199 Setaria italica
Seita.9G123600 1.0kb downstream 1.0kb downstream 5607 true scaffold_9: 7714200-7719806 Setaria italica
Seita.9G123600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 7718807-7719806 Setaria italica
Seita.9G123600 2.0kb upstream 2.0kb upstream 6607 true scaffold_9: 7712200-7718806 Setaria italica
Seita.9G123600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 7712200-7714199 Setaria italica
Seita.9G123600 2.0kb downstream 2.0kb downstream 6607 true scaffold_9: 7714200-7720806 Setaria italica
Seita.9G123600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 7718807-7720806 Setaria italica
Seita.9G123600 5.0kb upstream 5.0kb upstream 9607 true scaffold_9: 7709200-7718806 Setaria italica
Seita.9G123600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 7709200-7714199 Setaria italica
Seita.9G123600 5.0kb downstream 5.0kb downstream 9607 true scaffold_9: 7714200-7723806 Setaria italica
Seita.9G123600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 7718807-7723806 Setaria italica
Seita.9G123600 10.0kb upstream 10.0kb upstream 14607 true scaffold_9: 7704200-7718806 Setaria italica
Seita.9G123600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 7704200-7714199 Setaria italica
Seita.9G123600 10.0kb downstream 10.0kb downstream 14607 true scaffold_9: 7714200-7728806 Setaria italica
Seita.9G123600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 7718807-7728806 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176667 5267 Panicoideae View MSA
124568794 5269 Grass View MSA
122045455 5273 Angiosperm View MSA
121310450 5274 Embryophyte View MSA
123428791 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.722        
cufflinks 18.661     High High
cufflinks 2.539       Low
cufflinks 2.323       Low
cufflinks 3.109       Low
cufflinks 17.494     High High
cufflinks 9.355        
cufflinks 8.553        
cufflinks 6.708        
cufflinks 7.897        
cufflinks 11.371        
cufflinks 7.922        
cufflinks 10.018        
cufflinks 2.782       Low
cufflinks 10.126        
cufflinks 8.294        
cufflinks 9.14        
cufflinks 4.54        
cufflinks 2.508       Low
cufflinks 11.041        

0 Strain