Gene : Seita.9G123900 S. italica v2.2
Defline:  (1 of 2) PTHR11404:SF8 - SUPEROXIDE DISMUTASE [FE] 1, CHLOROPLASTIC Genomic Order:  1240
Name:  ? Seita.9G123900 Secondary Identifier:  ? PAC:32689920
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica DETOX1-PWY Setaria italica pathologic  
Sitalica DETOX1-PWY-1 Setaria italica pathologic  
Sitalica PWY-6854 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G123900 0.5kb upstream 0.5kb upstream 3039 true scaffold_9: 7769709-7772747 Setaria italica
Seita.9G123900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 7772248-7772747 Setaria italica
Seita.9G123900 0.5kb downstream 0.5kb downstream 3039 true scaffold_9: 7769209-7772247 Setaria italica
Seita.9G123900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 7769209-7769708 Setaria italica
Seita.9G123900 1.0kb upstream 1.0kb upstream 3539 true scaffold_9: 7769709-7773247 Setaria italica
Seita.9G123900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 7772248-7773247 Setaria italica
Seita.9G123900 1.0kb downstream 1.0kb downstream 3539 true scaffold_9: 7768709-7772247 Setaria italica
Seita.9G123900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 7768709-7769708 Setaria italica
Seita.9G123900 2.0kb upstream 2.0kb upstream 4539 true scaffold_9: 7769709-7774247 Setaria italica
Seita.9G123900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 7772248-7774247 Setaria italica
Seita.9G123900 2.0kb downstream 2.0kb downstream 4539 true scaffold_9: 7767709-7772247 Setaria italica
Seita.9G123900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 7767709-7769708 Setaria italica
Seita.9G123900 5.0kb upstream 5.0kb upstream 7539 true scaffold_9: 7769709-7777247 Setaria italica
Seita.9G123900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 7772248-7777247 Setaria italica
Seita.9G123900 5.0kb downstream 5.0kb downstream 7539 true scaffold_9: 7764709-7772247 Setaria italica
Seita.9G123900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 7764709-7769708 Setaria italica
Seita.9G123900 10.0kb upstream 10.0kb upstream 12539 true scaffold_9: 7769709-7782247 Setaria italica
Seita.9G123900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 7772248-7782247 Setaria italica
Seita.9G123900 10.0kb downstream 10.0kb downstream 12539 true scaffold_9: 7759709-7772247 Setaria italica
Seita.9G123900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 7759709-7769708 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186400 5267 Panicoideae View MSA
124572177 5269 Grass View MSA
122047747 5273 Angiosperm View MSA
121351401 5274 Embryophyte View MSA
123425969 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.556        
cufflinks 5.99        
cufflinks 3.185        
cufflinks 1.292       Low
cufflinks 6.039        
cufflinks 7.197        
cufflinks 10.045       High
cufflinks 12.318       High
cufflinks 30.844     High High
cufflinks 4.175        
cufflinks 5.209        
cufflinks 1.384       Low
cufflinks 1.739       Low
cufflinks 6.205        
cufflinks 1.794        
cufflinks 6.351        
cufflinks 1.753       Low
cufflinks 2.913        
cufflinks 1.667       Low
cufflinks 1.924        

0 Strain