Gene : Seita.9G127000 S. italica v2.2
Defline:  (1 of 1) PTHR12725//PTHR12725:SF81 - HALOACID DEHALOGENASE-LIKE HYDROLASE Genomic Order:  1270
Name:  ? Seita.9G127000 Secondary Identifier:  ? PAC:32688686
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7204 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G127000 0.5kb upstream 0.5kb upstream 4446 true scaffold_9: 7939138-7943583 Setaria italica
Seita.9G127000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 7943084-7943583 Setaria italica
Seita.9G127000 0.5kb downstream 0.5kb downstream 4446 true scaffold_9: 7938638-7943083 Setaria italica
Seita.9G127000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 7938638-7939137 Setaria italica
Seita.9G127000 1.0kb upstream 1.0kb upstream 4946 true scaffold_9: 7939138-7944083 Setaria italica
Seita.9G127000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 7943084-7944083 Setaria italica
Seita.9G127000 1.0kb downstream 1.0kb downstream 4946 true scaffold_9: 7938138-7943083 Setaria italica
Seita.9G127000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 7938138-7939137 Setaria italica
Seita.9G127000 2.0kb upstream 2.0kb upstream 5946 true scaffold_9: 7939138-7945083 Setaria italica
Seita.9G127000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 7943084-7945083 Setaria italica
Seita.9G127000 2.0kb downstream 2.0kb downstream 5946 true scaffold_9: 7937138-7943083 Setaria italica
Seita.9G127000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 7937138-7939137 Setaria italica
Seita.9G127000 5.0kb upstream 5.0kb upstream 8946 true scaffold_9: 7939138-7948083 Setaria italica
Seita.9G127000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 7943084-7948083 Setaria italica
Seita.9G127000 5.0kb downstream 5.0kb downstream 8946 true scaffold_9: 7934138-7943083 Setaria italica
Seita.9G127000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 7934138-7939137 Setaria italica
Seita.9G127000 10.0kb upstream 10.0kb upstream 13946 true scaffold_9: 7939138-7953083 Setaria italica
Seita.9G127000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 7943084-7953083 Setaria italica
Seita.9G127000 10.0kb downstream 10.0kb downstream 13946 true scaffold_9: 7929138-7943083 Setaria italica
Seita.9G127000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 7929138-7939137 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183548 5267 Panicoideae View MSA
124576602 5269 Grass View MSA
122048898 5273 Angiosperm View MSA
121311158 5274 Embryophyte View MSA
123426890 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.435        
cufflinks 1.89       Low
cufflinks 10.67        
cufflinks 23.063     High High
cufflinks 21.254     High High
cufflinks 2.378       Low
cufflinks 14.773     High  
cufflinks 9.076        
cufflinks 23.35     High High
cufflinks 8.319        
cufflinks 5.913        
cufflinks 12.222        
cufflinks 12.235        
cufflinks 19.981     High High
cufflinks 1.991       Low
cufflinks 4.879        
cufflinks 6.325        
cufflinks 12.205     High  
cufflinks 11.362     High  
cufflinks 2.685       Low

0 Strain