Gene : Seita.9G128900 S. italica v2.2

Defline:  (1 of 8) KOG3399 - Predicted Yippee-type zinc-binding protein Genomic Order:  1289
Name:  ? Seita.9G128900 Secondary Identifier:  ? PAC:32690931

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G128900 0.5kb upstream 0.5kb upstream 3814 true scaffold_9: 8113958-8117771 Setaria italica
Seita.9G128900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 8117272-8117771 Setaria italica
Seita.9G128900 0.5kb downstream 0.5kb downstream 3814 true scaffold_9: 8113458-8117271 Setaria italica
Seita.9G128900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 8113458-8113957 Setaria italica
Seita.9G128900 1.0kb upstream 1.0kb upstream 4314 true scaffold_9: 8113958-8118271 Setaria italica
Seita.9G128900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 8117272-8118271 Setaria italica
Seita.9G128900 1.0kb downstream 1.0kb downstream 4314 true scaffold_9: 8112958-8117271 Setaria italica
Seita.9G128900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 8112958-8113957 Setaria italica
Seita.9G128900 2.0kb upstream 2.0kb upstream 5314 true scaffold_9: 8113958-8119271 Setaria italica
Seita.9G128900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 8117272-8119271 Setaria italica
Seita.9G128900 2.0kb downstream 2.0kb downstream 5314 true scaffold_9: 8111958-8117271 Setaria italica
Seita.9G128900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 8111958-8113957 Setaria italica
Seita.9G128900 5.0kb upstream 5.0kb upstream 8314 true scaffold_9: 8113958-8122271 Setaria italica
Seita.9G128900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 8117272-8122271 Setaria italica
Seita.9G128900 5.0kb downstream 5.0kb downstream 8314 true scaffold_9: 8108958-8117271 Setaria italica
Seita.9G128900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 8108958-8113957 Setaria italica
Seita.9G128900 10.0kb upstream 10.0kb upstream 13314 true scaffold_9: 8113958-8127271 Setaria italica
Seita.9G128900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 8117272-8127271 Setaria italica
Seita.9G128900 10.0kb downstream 10.0kb downstream 13314 true scaffold_9: 8103958-8117271 Setaria italica
Seita.9G128900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 8103958-8113957 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183318 5267 Panicoideae View MSA
124588861 5269 Grass View MSA
122047992 5273 Angiosperm View MSA
123428914 5275 Viridiplantae View MSA
121350900 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.661        
cufflinks 9.864        
cufflinks 9.284        
cufflinks 12.545     High  
cufflinks 12.937     High  
cufflinks 11.745        
cufflinks 12.049        
cufflinks 11.934        
cufflinks 12.577     High  
cufflinks 16.243     High High
cufflinks 8.523       Low
cufflinks 11.549        
cufflinks 19.056     High High
cufflinks 7.025       Low
cufflinks 12.014        
cufflinks 12.606     High  
cufflinks 14.448     High  
cufflinks 10.949        
cufflinks 6.607       Low
cufflinks 12.477        

0 Strain