Gene : Seita.9G127800 S. italica v2.2
Defline:  (1 of 1) PTHR11771//PTHR11771:SF49 - LIPOXYGENASE Genomic Order:  1278
Name:  ? Seita.9G127800 Secondary Identifier:  ? PAC:32688759
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G127800 0.5kb upstream 0.5kb upstream 5142 true scaffold_9: 8006339-8011480 Setaria italica
Seita.9G127800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 8010981-8011480 Setaria italica
Seita.9G127800 0.5kb downstream 0.5kb downstream 5142 true scaffold_9: 8005839-8010980 Setaria italica
Seita.9G127800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 8005839-8006338 Setaria italica
Seita.9G127800 1.0kb upstream 1.0kb upstream 5642 true scaffold_9: 8006339-8011980 Setaria italica
Seita.9G127800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 8010981-8011980 Setaria italica
Seita.9G127800 1.0kb downstream 1.0kb downstream 5642 true scaffold_9: 8005339-8010980 Setaria italica
Seita.9G127800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 8005339-8006338 Setaria italica
Seita.9G127800 2.0kb upstream 2.0kb upstream 6642 true scaffold_9: 8006339-8012980 Setaria italica
Seita.9G127800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 8010981-8012980 Setaria italica
Seita.9G127800 2.0kb downstream 2.0kb downstream 6642 true scaffold_9: 8004339-8010980 Setaria italica
Seita.9G127800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 8004339-8006338 Setaria italica
Seita.9G127800 5.0kb upstream 5.0kb upstream 9642 true scaffold_9: 8006339-8015980 Setaria italica
Seita.9G127800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 8010981-8015980 Setaria italica
Seita.9G127800 5.0kb downstream 5.0kb downstream 9642 true scaffold_9: 8001339-8010980 Setaria italica
Seita.9G127800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 8001339-8006338 Setaria italica
Seita.9G127800 10.0kb upstream 10.0kb upstream 14642 true scaffold_9: 8006339-8020980 Setaria italica
Seita.9G127800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 8010981-8020980 Setaria italica
Seita.9G127800 10.0kb downstream 10.0kb downstream 14642 true scaffold_9: 7996339-8010980 Setaria italica
Seita.9G127800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 7996339-8006338 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182251 5267 Panicoideae View MSA
124585684 5269 Grass View MSA
122049504 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 64.698     High High
cufflinks 221.305     High High
cufflinks 0.672       Low
cufflinks 0.972       Low
cufflinks 7.275        
cufflinks 178.486     High High
cufflinks 9.123        
cufflinks 40.839     High  
cufflinks 25.195     High  
cufflinks 80.47     High High
cufflinks 58.415     High High
cufflinks 1.618        
cufflinks 16.917     High  
cufflinks 1.359       Low
cufflinks 2.479        
cufflinks 6.939        
cufflinks 4.656        
cufflinks 4.122        
cufflinks 1.433       Low
cufflinks 2.948        

0 Strain