Gene : Seita.9G213700 S. italica v2.2
Defline:  (1 of 1) PTHR12162 - NIBRIN-RELATED Genomic Order:  2137
Name:  ? Seita.9G213700 Secondary Identifier:  ? PAC:32687879
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G213700 0.5kb upstream 0.5kb upstream 4636 true scaffold_9: 15525157-15529792 Setaria italica
Seita.9G213700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 15529293-15529792 Setaria italica
Seita.9G213700 0.5kb downstream 0.5kb downstream 4636 true scaffold_9: 15524657-15529292 Setaria italica
Seita.9G213700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 15524657-15525156 Setaria italica
Seita.9G213700 1.0kb upstream 1.0kb upstream 5136 true scaffold_9: 15525157-15530292 Setaria italica
Seita.9G213700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 15529293-15530292 Setaria italica
Seita.9G213700 1.0kb downstream 1.0kb downstream 5136 true scaffold_9: 15524157-15529292 Setaria italica
Seita.9G213700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 15524157-15525156 Setaria italica
Seita.9G213700 2.0kb upstream 2.0kb upstream 6136 true scaffold_9: 15525157-15531292 Setaria italica
Seita.9G213700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 15529293-15531292 Setaria italica
Seita.9G213700 2.0kb downstream 2.0kb downstream 6136 true scaffold_9: 15523157-15529292 Setaria italica
Seita.9G213700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 15523157-15525156 Setaria italica
Seita.9G213700 5.0kb upstream 5.0kb upstream 9136 true scaffold_9: 15525157-15534292 Setaria italica
Seita.9G213700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 15529293-15534292 Setaria italica
Seita.9G213700 5.0kb downstream 5.0kb downstream 9136 true scaffold_9: 15520157-15529292 Setaria italica
Seita.9G213700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 15520157-15525156 Setaria italica
Seita.9G213700 10.0kb upstream 10.0kb upstream 14136 true scaffold_9: 15525157-15539292 Setaria italica
Seita.9G213700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 15529293-15539292 Setaria italica
Seita.9G213700 10.0kb downstream 10.0kb downstream 14136 true scaffold_9: 15515157-15529292 Setaria italica
Seita.9G213700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 15515157-15525156 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176811 5267 Panicoideae View MSA
124571874 5269 Grass View MSA
122047101 5273 Angiosperm View MSA
121349305 5274 Embryophyte View MSA
123381266 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.315        
cufflinks 2.195        
cufflinks 2.098        
cufflinks 2.071        
cufflinks 2.302        
cufflinks 2.067        
cufflinks 2.074        
cufflinks 2.267        
cufflinks 2.225        
cufflinks 2.064        
cufflinks 2.15        
cufflinks 2.453        
cufflinks 1.939       Low
cufflinks 2.424        
cufflinks 2.21        
cufflinks 2.403        
cufflinks 2.291        
cufflinks 2.996       High
cufflinks 1.851       Low
cufflinks 2.211        

0 Strain