Gene : Seita.9G214600 S. italica v2.2
Defline:  (1 of 9) PF01966 - HD domain (HD) Genomic Order:  2146
Name:  ? Seita.9G214600 Secondary Identifier:  ? PAC:32688739
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G214600 0.5kb upstream 0.5kb upstream 4330 true scaffold_9: 15585077-15589406 Setaria italica
Seita.9G214600 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 15588907-15589406 Setaria italica
Seita.9G214600 0.5kb downstream 0.5kb downstream 4330 true scaffold_9: 15584577-15588906 Setaria italica
Seita.9G214600 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 15584577-15585076 Setaria italica
Seita.9G214600 1.0kb upstream 1.0kb upstream 4830 true scaffold_9: 15585077-15589906 Setaria italica
Seita.9G214600 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 15588907-15589906 Setaria italica
Seita.9G214600 1.0kb downstream 1.0kb downstream 4830 true scaffold_9: 15584077-15588906 Setaria italica
Seita.9G214600 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 15584077-15585076 Setaria italica
Seita.9G214600 2.0kb upstream 2.0kb upstream 5830 true scaffold_9: 15585077-15590906 Setaria italica
Seita.9G214600 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 15588907-15590906 Setaria italica
Seita.9G214600 2.0kb downstream 2.0kb downstream 5830 true scaffold_9: 15583077-15588906 Setaria italica
Seita.9G214600 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 15583077-15585076 Setaria italica
Seita.9G214600 5.0kb upstream 5.0kb upstream 8830 true scaffold_9: 15585077-15593906 Setaria italica
Seita.9G214600 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 15588907-15593906 Setaria italica
Seita.9G214600 5.0kb downstream 5.0kb downstream 8830 true scaffold_9: 15580077-15588906 Setaria italica
Seita.9G214600 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 15580077-15585076 Setaria italica
Seita.9G214600 10.0kb upstream 10.0kb upstream 13830 true scaffold_9: 15585077-15598906 Setaria italica
Seita.9G214600 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 15588907-15598906 Setaria italica
Seita.9G214600 10.0kb downstream 10.0kb downstream 13830 true scaffold_9: 15575077-15588906 Setaria italica
Seita.9G214600 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 15575077-15585076 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186040 5267 Panicoideae View MSA
124570531 5269 Grass View MSA
122047991 5273 Angiosperm View MSA
121346124 5274 Embryophyte View MSA
123423985 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.135        
cufflinks 3.2        
cufflinks 1.928        
cufflinks 1.564       Low
cufflinks 1.867        
cufflinks 3.318        
cufflinks 2.043        
cufflinks 2.528        
cufflinks 2.322        
cufflinks 2.25        
cufflinks 3.054        
cufflinks 5.51       High
cufflinks 3.963        
cufflinks 2.537        
cufflinks 3.979        
cufflinks 1.585       Low
cufflinks 7.235       High
cufflinks 1.927        
cufflinks 1.918        
cufflinks 4.685       High

0 Strain