Gene : Seita.9G216100 S. italica v2.2
Defline:  (1 of 2) PTHR11877//PTHR11877:SF25 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE Genomic Order:  2161
Name:  ? Seita.9G216100 Secondary Identifier:  ? PAC:32688911
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY1F-FLAVSYN Setaria italica pathologic  
Sitalica PWY-6787 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G216100 0.5kb upstream 0.5kb upstream 2800 true scaffold_9: 15740889-15743688 Setaria italica
Seita.9G216100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 15743189-15743688 Setaria italica
Seita.9G216100 0.5kb downstream 0.5kb downstream 2800 true scaffold_9: 15740389-15743188 Setaria italica
Seita.9G216100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 15740389-15740888 Setaria italica
Seita.9G216100 1.0kb upstream 1.0kb upstream 3300 true scaffold_9: 15740889-15744188 Setaria italica
Seita.9G216100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 15743189-15744188 Setaria italica
Seita.9G216100 1.0kb downstream 1.0kb downstream 3300 true scaffold_9: 15739889-15743188 Setaria italica
Seita.9G216100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 15739889-15740888 Setaria italica
Seita.9G216100 2.0kb upstream 2.0kb upstream 4300 true scaffold_9: 15740889-15745188 Setaria italica
Seita.9G216100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 15743189-15745188 Setaria italica
Seita.9G216100 2.0kb downstream 2.0kb downstream 4300 true scaffold_9: 15738889-15743188 Setaria italica
Seita.9G216100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 15738889-15740888 Setaria italica
Seita.9G216100 5.0kb upstream 5.0kb upstream 7300 true scaffold_9: 15740889-15748188 Setaria italica
Seita.9G216100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 15743189-15748188 Setaria italica
Seita.9G216100 5.0kb downstream 5.0kb downstream 7300 true scaffold_9: 15735889-15743188 Setaria italica
Seita.9G216100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 15735889-15740888 Setaria italica
Seita.9G216100 10.0kb upstream 10.0kb upstream 12300 true scaffold_9: 15740889-15753188 Setaria italica
Seita.9G216100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 15743189-15753188 Setaria italica
Seita.9G216100 10.0kb downstream 10.0kb downstream 12300 true scaffold_9: 15730889-15743188 Setaria italica
Seita.9G216100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 15730889-15740888 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179338 5267 Panicoideae View MSA
124568709 5269 Grass View MSA
122045794 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.109     Low  
cufflinks 84.147     High High
cufflinks 0.054     Low  
cufflinks 0.114        
cufflinks 0.064     Low  
cufflinks 9.46       High
cufflinks 0.134        
cufflinks 0.137        
cufflinks 0.325        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.03     Low  
cufflinks 0.049     Low  
cufflinks 0.205        
cufflinks 0.123     Low  
cufflinks 0.109     Low  
cufflinks 0.138        
cufflinks 0.166        
cufflinks 0.04     Low  
cufflinks 0.227        
cufflinks 0.083     Low  

0 Strain