Gene : Seita.9G220100 S. italica v2.2
Defline:  (1 of 2) PTHR12388 - MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE Genomic Order:  2201
Name:  ? Seita.9G220100 Secondary Identifier:  ? PAC:32693422
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G220100 0.5kb upstream 0.5kb upstream 5482 true scaffold_9: 16348033-16353514 Setaria italica
Seita.9G220100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 16353015-16353514 Setaria italica
Seita.9G220100 0.5kb downstream 0.5kb downstream 5482 true scaffold_9: 16347533-16353014 Setaria italica
Seita.9G220100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 16347533-16348032 Setaria italica
Seita.9G220100 1.0kb upstream 1.0kb upstream 5982 true scaffold_9: 16348033-16354014 Setaria italica
Seita.9G220100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 16353015-16354014 Setaria italica
Seita.9G220100 1.0kb downstream 1.0kb downstream 5982 true scaffold_9: 16347033-16353014 Setaria italica
Seita.9G220100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 16347033-16348032 Setaria italica
Seita.9G220100 2.0kb upstream 2.0kb upstream 6982 true scaffold_9: 16348033-16355014 Setaria italica
Seita.9G220100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 16353015-16355014 Setaria italica
Seita.9G220100 2.0kb downstream 2.0kb downstream 6982 true scaffold_9: 16346033-16353014 Setaria italica
Seita.9G220100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 16346033-16348032 Setaria italica
Seita.9G220100 5.0kb upstream 5.0kb upstream 9982 true scaffold_9: 16348033-16358014 Setaria italica
Seita.9G220100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 16353015-16358014 Setaria italica
Seita.9G220100 5.0kb downstream 5.0kb downstream 9982 true scaffold_9: 16343033-16353014 Setaria italica
Seita.9G220100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 16343033-16348032 Setaria italica
Seita.9G220100 10.0kb upstream 10.0kb upstream 14982 true scaffold_9: 16348033-16363014 Setaria italica
Seita.9G220100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 16353015-16363014 Setaria italica
Seita.9G220100 10.0kb downstream 10.0kb downstream 14982 true scaffold_9: 16338033-16353014 Setaria italica
Seita.9G220100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 16338033-16348032 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175064 5267 Panicoideae View MSA
124573797 5269 Grass View MSA
122051009 5273 Angiosperm View MSA
121349876 5274 Embryophyte View MSA
123426047 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.984        
cufflinks 2.905        
cufflinks 2.663        
cufflinks 3.682        
cufflinks 3.468        
cufflinks 2.447       Low
cufflinks 2.497       Low
cufflinks 5.911       High
cufflinks 2.754        
cufflinks 6.109       High
cufflinks 3.215        
cufflinks 4.385        
cufflinks 4.588        
cufflinks 3.234        
cufflinks 4.107        
cufflinks 2.836        
cufflinks 3.844        
cufflinks 2.261       Low
cufflinks 5.265       High
cufflinks 3.405        

0 Strain