Gene : Seita.9G222800 S. italica v2.2
Defline:  (1 of 1) PTHR12363//PTHR12363:SF32 - TRANSPORTIN 3 AND IMPORTIN 13 Genomic Order:  2228
Name:  ? Seita.9G222800 Secondary Identifier:  ? PAC:32688291
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G222800 0.5kb upstream 0.5kb upstream 15387 true scaffold_9: 16609835-16625221 Setaria italica
Seita.9G222800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 16624722-16625221 Setaria italica
Seita.9G222800 0.5kb downstream 0.5kb downstream 15387 true scaffold_9: 16609335-16624721 Setaria italica
Seita.9G222800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 16609335-16609834 Setaria italica
Seita.9G222800 1.0kb upstream 1.0kb upstream 15887 true scaffold_9: 16609835-16625721 Setaria italica
Seita.9G222800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 16624722-16625721 Setaria italica
Seita.9G222800 1.0kb downstream 1.0kb downstream 15887 true scaffold_9: 16608835-16624721 Setaria italica
Seita.9G222800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 16608835-16609834 Setaria italica
Seita.9G222800 2.0kb upstream 2.0kb upstream 16887 true scaffold_9: 16609835-16626721 Setaria italica
Seita.9G222800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 16624722-16626721 Setaria italica
Seita.9G222800 2.0kb downstream 2.0kb downstream 16887 true scaffold_9: 16607835-16624721 Setaria italica
Seita.9G222800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 16607835-16609834 Setaria italica
Seita.9G222800 5.0kb upstream 5.0kb upstream 19887 true scaffold_9: 16609835-16629721 Setaria italica
Seita.9G222800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 16624722-16629721 Setaria italica
Seita.9G222800 5.0kb downstream 5.0kb downstream 19887 true scaffold_9: 16604835-16624721 Setaria italica
Seita.9G222800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 16604835-16609834 Setaria italica
Seita.9G222800 10.0kb upstream 10.0kb upstream 24887 true scaffold_9: 16609835-16634721 Setaria italica
Seita.9G222800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 16624722-16634721 Setaria italica
Seita.9G222800 10.0kb downstream 10.0kb downstream 24887 true scaffold_9: 16599835-16624721 Setaria italica
Seita.9G222800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 16599835-16609834 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176469 5267 Panicoideae View MSA
124571458 5269 Grass View MSA
122047073 5273 Angiosperm View MSA
121346085 5274 Embryophyte View MSA
123427248 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.961       High
cufflinks 4.918        
cufflinks 2.773       Low
cufflinks 2.132       Low
cufflinks 2.074       Low
cufflinks 4.412        
cufflinks 4.209        
cufflinks 3.491        
cufflinks 4.111        
cufflinks 5.68        
cufflinks 8.784       High
cufflinks 3.839        
cufflinks 5.247        
cufflinks 2.943        
cufflinks 6.216        
cufflinks 4.734        
cufflinks 4.464        
cufflinks 6.177        
cufflinks 2.221       Low
cufflinks 5.351        

0 Strain