Gene : Seita.9G225300 S. italica v2.2
Defline:  (1 of 1) PTHR11766 - TYROSYL-TRNA SYNTHETASE Genomic Order:  2253
Name:  ? Seita.9G225300 Secondary Identifier:  ? PAC:32692189
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRNA-CHARGING-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G225300 0.5kb upstream 0.5kb upstream 5381 true scaffold_9: 16902312-16907692 Setaria italica
Seita.9G225300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 16907193-16907692 Setaria italica
Seita.9G225300 0.5kb downstream 0.5kb downstream 5381 true scaffold_9: 16901812-16907192 Setaria italica
Seita.9G225300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 16901812-16902311 Setaria italica
Seita.9G225300 1.0kb upstream 1.0kb upstream 5881 true scaffold_9: 16902312-16908192 Setaria italica
Seita.9G225300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 16907193-16908192 Setaria italica
Seita.9G225300 1.0kb downstream 1.0kb downstream 5881 true scaffold_9: 16901312-16907192 Setaria italica
Seita.9G225300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 16901312-16902311 Setaria italica
Seita.9G225300 2.0kb upstream 2.0kb upstream 6881 true scaffold_9: 16902312-16909192 Setaria italica
Seita.9G225300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 16907193-16909192 Setaria italica
Seita.9G225300 2.0kb downstream 2.0kb downstream 6881 true scaffold_9: 16900312-16907192 Setaria italica
Seita.9G225300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 16900312-16902311 Setaria italica
Seita.9G225300 5.0kb upstream 5.0kb upstream 9881 true scaffold_9: 16902312-16912192 Setaria italica
Seita.9G225300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 16907193-16912192 Setaria italica
Seita.9G225300 5.0kb downstream 5.0kb downstream 9881 true scaffold_9: 16897312-16907192 Setaria italica
Seita.9G225300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 16897312-16902311 Setaria italica
Seita.9G225300 10.0kb upstream 10.0kb upstream 14881 true scaffold_9: 16902312-16917192 Setaria italica
Seita.9G225300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 16907193-16917192 Setaria italica
Seita.9G225300 10.0kb downstream 10.0kb downstream 14881 true scaffold_9: 16892312-16907192 Setaria italica
Seita.9G225300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 16892312-16902311 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189928 5267 Panicoideae View MSA
124584962 5269 Grass View MSA
122042111 5273 Angiosperm View MSA
121344516 5274 Embryophyte View MSA
123424944 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.155        
cufflinks 1.352        
cufflinks 1.152        
cufflinks 0.771        
cufflinks 1.867        
cufflinks 1.364        
cufflinks 2.18       High
cufflinks 2.454       High
cufflinks 3.918       High
cufflinks 0.773        
cufflinks 1.015        
cufflinks 0.629       Low
cufflinks 0.595       Low
cufflinks 1.483        
cufflinks 0.864        
cufflinks 1.506        
cufflinks 0.948        
cufflinks 1.136        
cufflinks 0.941        
cufflinks 0.757        

0 Strain