Gene : Seita.9G229500 S. italica v2.2
Defline:  (1 of 1) PTHR10584//PTHR10584:SF180 - SUGAR KINASE Genomic Order:  2295
Name:  ? Seita.9G229500 Secondary Identifier:  ? PAC:32692597
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY66-373 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G229500 0.5kb upstream 0.5kb upstream 3974 true scaffold_9: 17292112-17296085 Setaria italica
Seita.9G229500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 17295586-17296085 Setaria italica
Seita.9G229500 0.5kb downstream 0.5kb downstream 3974 true scaffold_9: 17291612-17295585 Setaria italica
Seita.9G229500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 17291612-17292111 Setaria italica
Seita.9G229500 1.0kb upstream 1.0kb upstream 4474 true scaffold_9: 17292112-17296585 Setaria italica
Seita.9G229500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 17295586-17296585 Setaria italica
Seita.9G229500 1.0kb downstream 1.0kb downstream 4474 true scaffold_9: 17291112-17295585 Setaria italica
Seita.9G229500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 17291112-17292111 Setaria italica
Seita.9G229500 2.0kb upstream 2.0kb upstream 5474 true scaffold_9: 17292112-17297585 Setaria italica
Seita.9G229500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 17295586-17297585 Setaria italica
Seita.9G229500 2.0kb downstream 2.0kb downstream 5474 true scaffold_9: 17290112-17295585 Setaria italica
Seita.9G229500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 17290112-17292111 Setaria italica
Seita.9G229500 5.0kb upstream 5.0kb upstream 8474 true scaffold_9: 17292112-17300585 Setaria italica
Seita.9G229500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 17295586-17300585 Setaria italica
Seita.9G229500 5.0kb downstream 5.0kb downstream 8474 true scaffold_9: 17287112-17295585 Setaria italica
Seita.9G229500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 17287112-17292111 Setaria italica
Seita.9G229500 10.0kb upstream 10.0kb upstream 13474 true scaffold_9: 17292112-17305585 Setaria italica
Seita.9G229500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 17295586-17305585 Setaria italica
Seita.9G229500 10.0kb downstream 10.0kb downstream 13474 true scaffold_9: 17282112-17295585 Setaria italica
Seita.9G229500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 17282112-17292111 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122055685 5267 Panicoideae Singleton cluster - no MSA
124590843 5269 Grass View MSA
122044169 5273 Angiosperm View MSA
121347285 5274 Embryophyte View MSA
123428634 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.549        
cufflinks 0.303        
cufflinks 0.582        
cufflinks 1.196       High
cufflinks 1.354       High
cufflinks 0.26        
cufflinks 0.85        
cufflinks 0.94        
cufflinks 0.572        
cufflinks 0.237     Low  
cufflinks 0.18       Low
cufflinks 0.181       Low
cufflinks 0.268        
cufflinks 0.554        
cufflinks 0.173       Low
cufflinks 0.968        
cufflinks 0.631        
cufflinks 1.053       High
cufflinks 1.303       High
cufflinks 0.103     Low Low

0 Strain