Gene : Seita.9G232900 S. italica v2.2
Defline:  (1 of 3) PTHR10799:SF350 - TRANSCRIPTIONAL REGULATOR ATRX HOMOLOG Genomic Order:  2329
Name:  ? Seita.9G232900 Secondary Identifier:  ? PAC:32690359
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G232900 0.5kb upstream 0.5kb upstream 18139 true scaffold_9: 17720243-17738381 Setaria italica
Seita.9G232900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 17737882-17738381 Setaria italica
Seita.9G232900 0.5kb downstream 0.5kb downstream 18139 true scaffold_9: 17719743-17737881 Setaria italica
Seita.9G232900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 17719743-17720242 Setaria italica
Seita.9G232900 1.0kb upstream 1.0kb upstream 18639 true scaffold_9: 17720243-17738881 Setaria italica
Seita.9G232900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 17737882-17738881 Setaria italica
Seita.9G232900 1.0kb downstream 1.0kb downstream 18639 true scaffold_9: 17719243-17737881 Setaria italica
Seita.9G232900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 17719243-17720242 Setaria italica
Seita.9G232900 2.0kb upstream 2.0kb upstream 19639 true scaffold_9: 17720243-17739881 Setaria italica
Seita.9G232900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 17737882-17739881 Setaria italica
Seita.9G232900 2.0kb downstream 2.0kb downstream 19639 true scaffold_9: 17718243-17737881 Setaria italica
Seita.9G232900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 17718243-17720242 Setaria italica
Seita.9G232900 5.0kb upstream 5.0kb upstream 22639 true scaffold_9: 17720243-17742881 Setaria italica
Seita.9G232900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 17737882-17742881 Setaria italica
Seita.9G232900 5.0kb downstream 5.0kb downstream 22639 true scaffold_9: 17715243-17737881 Setaria italica
Seita.9G232900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 17715243-17720242 Setaria italica
Seita.9G232900 10.0kb upstream 10.0kb upstream 27639 true scaffold_9: 17720243-17747881 Setaria italica
Seita.9G232900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 17737882-17747881 Setaria italica
Seita.9G232900 10.0kb downstream 10.0kb downstream 27639 true scaffold_9: 17710243-17737881 Setaria italica
Seita.9G232900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 17710243-17720242 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184808 5267 Panicoideae View MSA
124573273 5269 Grass View MSA
122043506 5273 Angiosperm View MSA
121348350 5274 Embryophyte View MSA
123428510 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.166        
cufflinks 1.106        
cufflinks 0.948        
cufflinks 0.67        
cufflinks 0.483       Low
cufflinks 1.051        
cufflinks 0.735        
cufflinks 0.5       Low
cufflinks 0.387       Low
cufflinks 0.542       Low
cufflinks 0.983        
cufflinks 1.038        
cufflinks 0.828        
cufflinks 0.963        
cufflinks 1.168        
cufflinks 1.025        
cufflinks 0.76        
cufflinks 1.619       High
cufflinks 0.557       Low
cufflinks 0.815        

0 Strain