Gene : Seita.9G233100 S. italica v2.2
Defline:  (1 of 1) 3.6.1.19 - Nucleoside-triphosphate diphosphatase / Nucleoside-triphosphate pyrophosphatase Genomic Order:  2331
Name:  ? Seita.9G233100 Secondary Identifier:  ? PAC:32691180
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7184 Setaria italica pathologic  
Sitalica PWY-7206 Setaria italica pathologic  
Sitalica PWY-7211 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G233100 0.5kb upstream 0.5kb upstream 3284 true scaffold_9: 17775229-17778512 Setaria italica
Seita.9G233100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 17775229-17775728 Setaria italica
Seita.9G233100 0.5kb downstream 0.5kb downstream 3284 true scaffold_9: 17775729-17779012 Setaria italica
Seita.9G233100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 17778513-17779012 Setaria italica
Seita.9G233100 1.0kb upstream 1.0kb upstream 3784 true scaffold_9: 17774729-17778512 Setaria italica
Seita.9G233100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 17774729-17775728 Setaria italica
Seita.9G233100 1.0kb downstream 1.0kb downstream 3784 true scaffold_9: 17775729-17779512 Setaria italica
Seita.9G233100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 17778513-17779512 Setaria italica
Seita.9G233100 2.0kb upstream 2.0kb upstream 4784 true scaffold_9: 17773729-17778512 Setaria italica
Seita.9G233100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 17773729-17775728 Setaria italica
Seita.9G233100 2.0kb downstream 2.0kb downstream 4784 true scaffold_9: 17775729-17780512 Setaria italica
Seita.9G233100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 17778513-17780512 Setaria italica
Seita.9G233100 5.0kb upstream 5.0kb upstream 7784 true scaffold_9: 17770729-17778512 Setaria italica
Seita.9G233100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 17770729-17775728 Setaria italica
Seita.9G233100 5.0kb downstream 5.0kb downstream 7784 true scaffold_9: 17775729-17783512 Setaria italica
Seita.9G233100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 17778513-17783512 Setaria italica
Seita.9G233100 10.0kb upstream 10.0kb upstream 12784 true scaffold_9: 17765729-17778512 Setaria italica
Seita.9G233100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 17765729-17775728 Setaria italica
Seita.9G233100 10.0kb downstream 10.0kb downstream 12784 true scaffold_9: 17775729-17788512 Setaria italica
Seita.9G233100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 17778513-17788512 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179578 5267 Panicoideae View MSA
124580947 5269 Grass View MSA
122044439 5273 Angiosperm View MSA
121346203 5274 Embryophyte View MSA
123426243 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.834        
cufflinks 5.902        
cufflinks 1.943       Low
cufflinks 2.065       Low
cufflinks 2.514       Low
cufflinks 4.875        
cufflinks 5.411        
cufflinks 6.567        
cufflinks 6.545        
cufflinks 9.538       High
cufflinks 4.978        
cufflinks 5.682        
cufflinks 5.965        
cufflinks 3.29        
cufflinks 6.999        
cufflinks 6.444        
cufflinks 7.532        
cufflinks 6.587        
cufflinks 2.322       Low
cufflinks 6.169        

0 Strain