Gene : Seita.9G236100 S. italica v2.2
Defline:  (1 of 1) PTHR13107//PTHR13107:SF1 - KARYOGAMY PROTEIN KAR4-RELATED Genomic Order:  2361
Name:  ? Seita.9G236100 Secondary Identifier:  ? PAC:32693453
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G236100 0.5kb upstream 0.5kb upstream 5369 true scaffold_9: 18081928-18087296 Setaria italica
Seita.9G236100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 18086797-18087296 Setaria italica
Seita.9G236100 0.5kb downstream 0.5kb downstream 5369 true scaffold_9: 18081428-18086796 Setaria italica
Seita.9G236100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 18081428-18081927 Setaria italica
Seita.9G236100 1.0kb upstream 1.0kb upstream 5869 true scaffold_9: 18081928-18087796 Setaria italica
Seita.9G236100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 18086797-18087796 Setaria italica
Seita.9G236100 1.0kb downstream 1.0kb downstream 5869 true scaffold_9: 18080928-18086796 Setaria italica
Seita.9G236100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 18080928-18081927 Setaria italica
Seita.9G236100 2.0kb upstream 2.0kb upstream 6869 true scaffold_9: 18081928-18088796 Setaria italica
Seita.9G236100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 18086797-18088796 Setaria italica
Seita.9G236100 2.0kb downstream 2.0kb downstream 6869 true scaffold_9: 18079928-18086796 Setaria italica
Seita.9G236100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 18079928-18081927 Setaria italica
Seita.9G236100 5.0kb upstream 5.0kb upstream 9869 true scaffold_9: 18081928-18091796 Setaria italica
Seita.9G236100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 18086797-18091796 Setaria italica
Seita.9G236100 5.0kb downstream 5.0kb downstream 9869 true scaffold_9: 18076928-18086796 Setaria italica
Seita.9G236100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 18076928-18081927 Setaria italica
Seita.9G236100 10.0kb upstream 10.0kb upstream 14869 true scaffold_9: 18081928-18096796 Setaria italica
Seita.9G236100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 18086797-18096796 Setaria italica
Seita.9G236100 10.0kb downstream 10.0kb downstream 14869 true scaffold_9: 18071928-18086796 Setaria italica
Seita.9G236100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 18071928-18081927 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122116055 5267 Panicoideae View MSA
124569913 5269 Grass View MSA
122041791 5273 Angiosperm View MSA
121349708 5274 Embryophyte View MSA
123428450 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.859        
cufflinks 8.069        
cufflinks 14.49     High High
cufflinks 11.38     High  
cufflinks 9.139        
cufflinks 8.046        
cufflinks 9.708        
cufflinks 5.626       Low
cufflinks 6.074       Low
cufflinks 4.759       Low
cufflinks 9.198        
cufflinks 10.832        
cufflinks 8.346        
cufflinks 11.708        
cufflinks 13.143       High
cufflinks 10.781        
cufflinks 10.465        
cufflinks 10.096        
cufflinks 9.529        
cufflinks 10.878        

0 Strain