Gene : Seita.9G245200 S. italica v2.2
Defline:  (1 of 4) PTHR10126 - TATA-BOX BINDING PROTEIN Genomic Order:  2452
Name:  ? Seita.9G245200 Secondary Identifier:  ? PAC:32691785
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G245200 0.5kb upstream 0.5kb upstream 3248 true scaffold_9: 19127597-19130844 Setaria italica
Seita.9G245200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 19127597-19128096 Setaria italica
Seita.9G245200 0.5kb downstream 0.5kb downstream 3248 true scaffold_9: 19128097-19131344 Setaria italica
Seita.9G245200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 19130845-19131344 Setaria italica
Seita.9G245200 1.0kb upstream 1.0kb upstream 3748 true scaffold_9: 19127097-19130844 Setaria italica
Seita.9G245200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 19127097-19128096 Setaria italica
Seita.9G245200 1.0kb downstream 1.0kb downstream 3748 true scaffold_9: 19128097-19131844 Setaria italica
Seita.9G245200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 19130845-19131844 Setaria italica
Seita.9G245200 2.0kb upstream 2.0kb upstream 4748 true scaffold_9: 19126097-19130844 Setaria italica
Seita.9G245200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 19126097-19128096 Setaria italica
Seita.9G245200 2.0kb downstream 2.0kb downstream 4748 true scaffold_9: 19128097-19132844 Setaria italica
Seita.9G245200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 19130845-19132844 Setaria italica
Seita.9G245200 5.0kb upstream 5.0kb upstream 7748 true scaffold_9: 19123097-19130844 Setaria italica
Seita.9G245200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 19123097-19128096 Setaria italica
Seita.9G245200 5.0kb downstream 5.0kb downstream 7748 true scaffold_9: 19128097-19135844 Setaria italica
Seita.9G245200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 19130845-19135844 Setaria italica
Seita.9G245200 10.0kb upstream 10.0kb upstream 12748 true scaffold_9: 19118097-19130844 Setaria italica
Seita.9G245200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 19118097-19128096 Setaria italica
Seita.9G245200 10.0kb downstream 10.0kb downstream 12748 true scaffold_9: 19128097-19140844 Setaria italica
Seita.9G245200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 19130845-19140844 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121994185 5273 Angiosperm View MSA
122192211 5267 Panicoideae View MSA
124583251 5269 Grass View MSA
123429185 5275 Viridiplantae View MSA
121264423 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.046     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.219       High
cufflinks 0.003     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  

0 Strain