Gene : Seita.9G171800 S. italica v2.2
Defline:  (1 of 8) PF04788 - Protein of unknown function (DUF620) (DUF620) Genomic Order:  1718
Name:  ? Seita.9G171800 Secondary Identifier:  ? PAC:32689992
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G171800 0.5kb upstream 0.5kb upstream 3270 true scaffold_9: 11692803-11696072 Setaria italica
Seita.9G171800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 11692803-11693302 Setaria italica
Seita.9G171800 0.5kb downstream 0.5kb downstream 3270 true scaffold_9: 11693303-11696572 Setaria italica
Seita.9G171800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 11696073-11696572 Setaria italica
Seita.9G171800 1.0kb upstream 1.0kb upstream 3770 true scaffold_9: 11692303-11696072 Setaria italica
Seita.9G171800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 11692303-11693302 Setaria italica
Seita.9G171800 1.0kb downstream 1.0kb downstream 3770 true scaffold_9: 11693303-11697072 Setaria italica
Seita.9G171800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 11696073-11697072 Setaria italica
Seita.9G171800 2.0kb upstream 2.0kb upstream 4770 true scaffold_9: 11691303-11696072 Setaria italica
Seita.9G171800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 11691303-11693302 Setaria italica
Seita.9G171800 2.0kb downstream 2.0kb downstream 4770 true scaffold_9: 11693303-11698072 Setaria italica
Seita.9G171800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 11696073-11698072 Setaria italica
Seita.9G171800 5.0kb upstream 5.0kb upstream 7770 true scaffold_9: 11688303-11696072 Setaria italica
Seita.9G171800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 11688303-11693302 Setaria italica
Seita.9G171800 5.0kb downstream 5.0kb downstream 7770 true scaffold_9: 11693303-11701072 Setaria italica
Seita.9G171800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 11696073-11701072 Setaria italica
Seita.9G171800 10.0kb upstream 10.0kb upstream 12770 true scaffold_9: 11683303-11696072 Setaria italica
Seita.9G171800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 11683303-11693302 Setaria italica
Seita.9G171800 10.0kb downstream 10.0kb downstream 12770 true scaffold_9: 11693303-11706072 Setaria italica
Seita.9G171800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 11696073-11706072 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187557 5267 Panicoideae View MSA
124572745 5269 Grass View MSA
122043427 5273 Angiosperm View MSA
121310121 5274 Embryophyte View MSA
123347696 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.499        
cufflinks 17.55     High High
cufflinks 5.305        
cufflinks 5.952        
cufflinks 4.282        
cufflinks 18.505     High High
cufflinks 4.058        
cufflinks 4.434        
cufflinks 3.197        
cufflinks 3.888        
cufflinks 3.921        
cufflinks 2.029       Low
cufflinks 1.493       Low
cufflinks 6.292        
cufflinks 5.012        
cufflinks 3.623        
cufflinks 3.684        
cufflinks 3.064        
cufflinks 10.841       High
cufflinks 3.415        

0 Strain