Gene : Seita.9G172800 S. italica v2.2
Genomic Order:  1728 Name:  ? Seita.9G172800
Secondary Identifier:  ? PAC:32688376
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G172800 0.5kb upstream 0.5kb upstream 7058 true scaffold_9: 11791150-11798207 Setaria italica
Seita.9G172800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 11791150-11791649 Setaria italica
Seita.9G172800 0.5kb downstream 0.5kb downstream 7058 true scaffold_9: 11791650-11798707 Setaria italica
Seita.9G172800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 11798208-11798707 Setaria italica
Seita.9G172800 1.0kb upstream 1.0kb upstream 7558 true scaffold_9: 11790650-11798207 Setaria italica
Seita.9G172800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 11790650-11791649 Setaria italica
Seita.9G172800 1.0kb downstream 1.0kb downstream 7558 true scaffold_9: 11791650-11799207 Setaria italica
Seita.9G172800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 11798208-11799207 Setaria italica
Seita.9G172800 2.0kb upstream 2.0kb upstream 8558 true scaffold_9: 11789650-11798207 Setaria italica
Seita.9G172800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 11789650-11791649 Setaria italica
Seita.9G172800 2.0kb downstream 2.0kb downstream 8558 true scaffold_9: 11791650-11800207 Setaria italica
Seita.9G172800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 11798208-11800207 Setaria italica
Seita.9G172800 5.0kb upstream 5.0kb upstream 11558 true scaffold_9: 11786650-11798207 Setaria italica
Seita.9G172800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 11786650-11791649 Setaria italica
Seita.9G172800 5.0kb downstream 5.0kb downstream 11558 true scaffold_9: 11791650-11803207 Setaria italica
Seita.9G172800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 11798208-11803207 Setaria italica
Seita.9G172800 10.0kb upstream 10.0kb upstream 16558 true scaffold_9: 11781650-11798207 Setaria italica
Seita.9G172800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 11781650-11791649 Setaria italica
Seita.9G172800 10.0kb downstream 10.0kb downstream 16558 true scaffold_9: 11791650-11808207 Setaria italica
Seita.9G172800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 11798208-11808207 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190637 5267 Panicoideae View MSA
124582129 5269 Grass View MSA
122047808 5273 Angiosperm View MSA
121347150 5274 Embryophyte View MSA
123380500 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.274        
cufflinks 1.187        
cufflinks 0.842        
cufflinks 0.776        
cufflinks 0.993        
cufflinks 1.506        
cufflinks 1.601        
cufflinks 3.258       High
cufflinks 2.667       High
cufflinks 5.563       High
cufflinks 1.016        
cufflinks 0.761        
cufflinks 0.708        
cufflinks 1.698        
cufflinks 0.607       Low
cufflinks 1.457        
cufflinks 1.088        
cufflinks 1.374        
cufflinks 0.599       Low
cufflinks 0.967        

0 Strain