Gene : Seita.9G173800 S. italica v2.2
Defline:  (1 of 1) PTHR22870:SF170 - REGULATOR OF CHROMOSOME CONDENSATION FAMILY PROTEIN Genomic Order:  1738
Name:  ? Seita.9G173800 Secondary Identifier:  ? PAC:32691048
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G173800 0.5kb upstream 0.5kb upstream 7253 true scaffold_9: 11945033-11952285 Setaria italica
Seita.9G173800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 11951786-11952285 Setaria italica
Seita.9G173800 0.5kb downstream 0.5kb downstream 7253 true scaffold_9: 11944533-11951785 Setaria italica
Seita.9G173800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 11944533-11945032 Setaria italica
Seita.9G173800 1.0kb upstream 1.0kb upstream 7753 true scaffold_9: 11945033-11952785 Setaria italica
Seita.9G173800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 11951786-11952785 Setaria italica
Seita.9G173800 1.0kb downstream 1.0kb downstream 7753 true scaffold_9: 11944033-11951785 Setaria italica
Seita.9G173800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 11944033-11945032 Setaria italica
Seita.9G173800 2.0kb upstream 2.0kb upstream 8753 true scaffold_9: 11945033-11953785 Setaria italica
Seita.9G173800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 11951786-11953785 Setaria italica
Seita.9G173800 2.0kb downstream 2.0kb downstream 8753 true scaffold_9: 11943033-11951785 Setaria italica
Seita.9G173800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 11943033-11945032 Setaria italica
Seita.9G173800 5.0kb upstream 5.0kb upstream 11753 true scaffold_9: 11945033-11956785 Setaria italica
Seita.9G173800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 11951786-11956785 Setaria italica
Seita.9G173800 5.0kb downstream 5.0kb downstream 11753 true scaffold_9: 11940033-11951785 Setaria italica
Seita.9G173800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 11940033-11945032 Setaria italica
Seita.9G173800 10.0kb upstream 10.0kb upstream 16753 true scaffold_9: 11945033-11961785 Setaria italica
Seita.9G173800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 11951786-11961785 Setaria italica
Seita.9G173800 10.0kb downstream 10.0kb downstream 16753 true scaffold_9: 11935033-11951785 Setaria italica
Seita.9G173800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 11935033-11945032 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196228 5267 Panicoideae View MSA
124572544 5269 Grass View MSA
122046241 5273 Angiosperm View MSA
121310578 5274 Embryophyte View MSA
123348026 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.044        
cufflinks 8.731       High
cufflinks 4.961        
cufflinks 3.517       Low
cufflinks 3.561       Low
cufflinks 3.985        
cufflinks 6.486        
cufflinks 5.667        
cufflinks 3.773       Low
cufflinks 4.395        
cufflinks 5.314        
cufflinks 5.297        
cufflinks 4.354        
cufflinks 7.935       High
cufflinks 9.285       High
cufflinks 6.046        
cufflinks 4.081        
cufflinks 5.988        
cufflinks 5.536        
cufflinks 3.871        

0 Strain