Gene : Seita.9G177100 S. italica v2.2
Defline:  (1 of 1) PTHR21649//PTHR21649:SF8 - CHLOROPHYLL A/B BINDING PROTEIN Genomic Order:  1771
Name:  ? Seita.9G177100 Secondary Identifier:  ? PAC:32692114
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G177100 0.5kb upstream 0.5kb upstream 1646 true scaffold_9: 12182062-12183707 Setaria italica
Seita.9G177100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 12183208-12183707 Setaria italica
Seita.9G177100 0.5kb downstream 0.5kb downstream 1646 true scaffold_9: 12181562-12183207 Setaria italica
Seita.9G177100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 12181562-12182061 Setaria italica
Seita.9G177100 1.0kb upstream 1.0kb upstream 2146 true scaffold_9: 12182062-12184207 Setaria italica
Seita.9G177100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 12183208-12184207 Setaria italica
Seita.9G177100 1.0kb downstream 1.0kb downstream 2146 true scaffold_9: 12181062-12183207 Setaria italica
Seita.9G177100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 12181062-12182061 Setaria italica
Seita.9G177100 2.0kb upstream 2.0kb upstream 3146 true scaffold_9: 12182062-12185207 Setaria italica
Seita.9G177100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 12183208-12185207 Setaria italica
Seita.9G177100 2.0kb downstream 2.0kb downstream 3146 true scaffold_9: 12180062-12183207 Setaria italica
Seita.9G177100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 12180062-12182061 Setaria italica
Seita.9G177100 5.0kb upstream 5.0kb upstream 6146 true scaffold_9: 12182062-12188207 Setaria italica
Seita.9G177100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 12183208-12188207 Setaria italica
Seita.9G177100 5.0kb downstream 5.0kb downstream 6146 true scaffold_9: 12177062-12183207 Setaria italica
Seita.9G177100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 12177062-12182061 Setaria italica
Seita.9G177100 10.0kb upstream 10.0kb upstream 11146 true scaffold_9: 12182062-12193207 Setaria italica
Seita.9G177100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 12183208-12193207 Setaria italica
Seita.9G177100 10.0kb downstream 10.0kb downstream 11146 true scaffold_9: 12172062-12183207 Setaria italica
Seita.9G177100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 12172062-12182061 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041019 5273 Angiosperm View MSA
122197971 5267 Panicoideae View MSA
124568548 5269 Grass View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.882     High  
cufflinks 352.565     High  
cufflinks 676.471     High  
cufflinks 1482.778     High  
cufflinks 2692.448     High High
cufflinks 242.251     High  
cufflinks 1401.864     High  
cufflinks 1886.269     High  
cufflinks 1377.508     High  
cufflinks 11.553        
cufflinks 11.685        
cufflinks 0.07     Low Low
cufflinks 2.756       Low
cufflinks 495.16     High  
cufflinks 1.375       Low
cufflinks 555.862     High  
cufflinks 0.253       Low
cufflinks 10.959        
cufflinks 655.521     High  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain