Gene : Seita.9G182200 S. italica v2.2
Defline:  (1 of 1) PTHR11214:SF5 - BETA-1,3-GALACTOSYLTRANSFERASE 2-RELATED Genomic Order:  1822
Name:  ? Seita.9G182200 Secondary Identifier:  ? PAC:32692555
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G182200 0.5kb upstream 0.5kb upstream 5496 true scaffold_9: 12563645-12569140 Setaria italica
Seita.9G182200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 12563645-12564144 Setaria italica
Seita.9G182200 0.5kb downstream 0.5kb downstream 5496 true scaffold_9: 12564145-12569640 Setaria italica
Seita.9G182200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 12569141-12569640 Setaria italica
Seita.9G182200 1.0kb upstream 1.0kb upstream 5996 true scaffold_9: 12563145-12569140 Setaria italica
Seita.9G182200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 12563145-12564144 Setaria italica
Seita.9G182200 1.0kb downstream 1.0kb downstream 5996 true scaffold_9: 12564145-12570140 Setaria italica
Seita.9G182200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 12569141-12570140 Setaria italica
Seita.9G182200 2.0kb upstream 2.0kb upstream 6996 true scaffold_9: 12562145-12569140 Setaria italica
Seita.9G182200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 12562145-12564144 Setaria italica
Seita.9G182200 2.0kb downstream 2.0kb downstream 6996 true scaffold_9: 12564145-12571140 Setaria italica
Seita.9G182200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 12569141-12571140 Setaria italica
Seita.9G182200 5.0kb upstream 5.0kb upstream 9996 true scaffold_9: 12559145-12569140 Setaria italica
Seita.9G182200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 12559145-12564144 Setaria italica
Seita.9G182200 5.0kb downstream 5.0kb downstream 9996 true scaffold_9: 12564145-12574140 Setaria italica
Seita.9G182200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 12569141-12574140 Setaria italica
Seita.9G182200 10.0kb upstream 10.0kb upstream 14996 true scaffold_9: 12554145-12569140 Setaria italica
Seita.9G182200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 12554145-12564144 Setaria italica
Seita.9G182200 10.0kb downstream 10.0kb downstream 14996 true scaffold_9: 12564145-12579140 Setaria italica
Seita.9G182200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 12569141-12579140 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189539 5267 Panicoideae View MSA
124575692 5269 Grass View MSA
122042482 5273 Angiosperm View MSA
121348547 5274 Embryophyte View MSA
123427932 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.274        
cufflinks 13.438     High  
cufflinks 2.672       Low
cufflinks 2.044       Low
cufflinks 2.289       Low
cufflinks 16.084     High High
cufflinks 9.172        
cufflinks 5.66        
cufflinks 6.143        
cufflinks 16.915     High High
cufflinks 15.06     High High
cufflinks 6.659        
cufflinks 11.163        
cufflinks 3.713        
cufflinks 14.739     High High
cufflinks 5.203        
cufflinks 7.62        
cufflinks 2.358       Low
cufflinks 2.846       Low
cufflinks 12.431        

0 Strain