Gene : Seita.9G184400 S. italica v2.2
Defline:  (1 of 1) PTHR12668:SF0 - UPF0136 MEMBRANE PROTEIN CG5532 Genomic Order:  1844
Name:  ? Seita.9G184400 Secondary Identifier:  ? PAC:32687722
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G184400 0.5kb upstream 0.5kb upstream 3577 true scaffold_9: 12820895-12824471 Setaria italica
Seita.9G184400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 12820895-12821394 Setaria italica
Seita.9G184400 0.5kb downstream 0.5kb downstream 3577 true scaffold_9: 12821395-12824971 Setaria italica
Seita.9G184400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 12824472-12824971 Setaria italica
Seita.9G184400 1.0kb upstream 1.0kb upstream 4077 true scaffold_9: 12820395-12824471 Setaria italica
Seita.9G184400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 12820395-12821394 Setaria italica
Seita.9G184400 1.0kb downstream 1.0kb downstream 4077 true scaffold_9: 12821395-12825471 Setaria italica
Seita.9G184400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 12824472-12825471 Setaria italica
Seita.9G184400 2.0kb upstream 2.0kb upstream 5077 true scaffold_9: 12819395-12824471 Setaria italica
Seita.9G184400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 12819395-12821394 Setaria italica
Seita.9G184400 2.0kb downstream 2.0kb downstream 5077 true scaffold_9: 12821395-12826471 Setaria italica
Seita.9G184400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 12824472-12826471 Setaria italica
Seita.9G184400 5.0kb upstream 5.0kb upstream 8077 true scaffold_9: 12816395-12824471 Setaria italica
Seita.9G184400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 12816395-12821394 Setaria italica
Seita.9G184400 5.0kb downstream 5.0kb downstream 8077 true scaffold_9: 12821395-12829471 Setaria italica
Seita.9G184400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 12824472-12829471 Setaria italica
Seita.9G184400 10.0kb upstream 10.0kb upstream 13077 true scaffold_9: 12811395-12824471 Setaria italica
Seita.9G184400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 12811395-12821394 Setaria italica
Seita.9G184400 10.0kb downstream 10.0kb downstream 13077 true scaffold_9: 12821395-12834471 Setaria italica
Seita.9G184400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 12824472-12834471 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185013 5267 Panicoideae View MSA
124586519 5269 Grass View MSA
122043738 5273 Angiosperm View MSA
121351316 5274 Embryophyte View MSA
123426664 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.069        
cufflinks 3.715        
cufflinks 1.601       Low
cufflinks 2.128       Low
cufflinks 2.265        
cufflinks 3.115        
cufflinks 2.638        
cufflinks 5.243        
cufflinks 2.602        
cufflinks 11.254       High
cufflinks 3.838        
cufflinks 9.186       High
cufflinks 7.219        
cufflinks 4.004        
cufflinks 8.262       High
cufflinks 2.058       Low
cufflinks 11.596       High
cufflinks 1.822       Low
cufflinks 2.983        
cufflinks 10.795       High

0 Strain