Gene : Seita.9G185100 S. italica v2.2
Defline:  (1 of 1) PTHR34203:SF2 - EXPRESSED PROTEIN Genomic Order:  1851
Name:  ? Seita.9G185100 Secondary Identifier:  ? PAC:32691704
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G185100 0.5kb upstream 0.5kb upstream 3104 true scaffold_9: 12873514-12876617 Setaria italica
Seita.9G185100 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 12876118-12876617 Setaria italica
Seita.9G185100 0.5kb downstream 0.5kb downstream 3104 true scaffold_9: 12873014-12876117 Setaria italica
Seita.9G185100 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 12873014-12873513 Setaria italica
Seita.9G185100 1.0kb upstream 1.0kb upstream 3604 true scaffold_9: 12873514-12877117 Setaria italica
Seita.9G185100 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 12876118-12877117 Setaria italica
Seita.9G185100 1.0kb downstream 1.0kb downstream 3604 true scaffold_9: 12872514-12876117 Setaria italica
Seita.9G185100 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 12872514-12873513 Setaria italica
Seita.9G185100 2.0kb upstream 2.0kb upstream 4604 true scaffold_9: 12873514-12878117 Setaria italica
Seita.9G185100 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 12876118-12878117 Setaria italica
Seita.9G185100 2.0kb downstream 2.0kb downstream 4604 true scaffold_9: 12871514-12876117 Setaria italica
Seita.9G185100 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 12871514-12873513 Setaria italica
Seita.9G185100 5.0kb upstream 5.0kb upstream 7604 true scaffold_9: 12873514-12881117 Setaria italica
Seita.9G185100 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 12876118-12881117 Setaria italica
Seita.9G185100 5.0kb downstream 5.0kb downstream 7604 true scaffold_9: 12868514-12876117 Setaria italica
Seita.9G185100 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 12868514-12873513 Setaria italica
Seita.9G185100 10.0kb upstream 10.0kb upstream 12604 true scaffold_9: 12873514-12886117 Setaria italica
Seita.9G185100 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 12876118-12886117 Setaria italica
Seita.9G185100 10.0kb downstream 10.0kb downstream 12604 true scaffold_9: 12863514-12876117 Setaria italica
Seita.9G185100 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 12863514-12873513 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196721 5267 Panicoideae View MSA
124578656 5269 Grass View MSA
122043086 5273 Angiosperm View MSA
121350667 5274 Embryophyte View MSA
123426731 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.98       High
cufflinks 3.465        
cufflinks 0.637       Low
cufflinks 0.878       Low
cufflinks 1.685        
cufflinks 3.159        
cufflinks 2.812        
cufflinks 3.083        
cufflinks 2.178        
cufflinks 3.933       High
cufflinks 3.893       High
cufflinks 2.238        
cufflinks 1.45        
cufflinks 1.151       Low
cufflinks 2.398        
cufflinks 3.153        
cufflinks 2.521        
cufflinks 3.016        
cufflinks 0.767       Low
cufflinks 2.287        

0 Strain