Gene : Seita.9G189200 S. italica v2.2
Defline:  (1 of 2) PTHR13038 - APG9 AUTOPHAGY 9 Genomic Order:  1892
Name:  ? Seita.9G189200 Secondary Identifier:  ? PAC:32692369
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G189200 0.5kb upstream 0.5kb upstream 6809 true scaffold_9: 13210654-13217462 Setaria italica
Seita.9G189200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 13216963-13217462 Setaria italica
Seita.9G189200 0.5kb downstream 0.5kb downstream 6809 true scaffold_9: 13210154-13216962 Setaria italica
Seita.9G189200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 13210154-13210653 Setaria italica
Seita.9G189200 1.0kb upstream 1.0kb upstream 7309 true scaffold_9: 13210654-13217962 Setaria italica
Seita.9G189200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 13216963-13217962 Setaria italica
Seita.9G189200 1.0kb downstream 1.0kb downstream 7309 true scaffold_9: 13209654-13216962 Setaria italica
Seita.9G189200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 13209654-13210653 Setaria italica
Seita.9G189200 2.0kb upstream 2.0kb upstream 8309 true scaffold_9: 13210654-13218962 Setaria italica
Seita.9G189200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 13216963-13218962 Setaria italica
Seita.9G189200 2.0kb downstream 2.0kb downstream 8309 true scaffold_9: 13208654-13216962 Setaria italica
Seita.9G189200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 13208654-13210653 Setaria italica
Seita.9G189200 5.0kb upstream 5.0kb upstream 11309 true scaffold_9: 13210654-13221962 Setaria italica
Seita.9G189200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 13216963-13221962 Setaria italica
Seita.9G189200 5.0kb downstream 5.0kb downstream 11309 true scaffold_9: 13205654-13216962 Setaria italica
Seita.9G189200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 13205654-13210653 Setaria italica
Seita.9G189200 10.0kb upstream 10.0kb upstream 16309 true scaffold_9: 13210654-13226962 Setaria italica
Seita.9G189200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 13216963-13226962 Setaria italica
Seita.9G189200 10.0kb downstream 10.0kb downstream 16309 true scaffold_9: 13200654-13216962 Setaria italica
Seita.9G189200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 13200654-13210653 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185097 5267 Panicoideae View MSA
124579747 5269 Grass View MSA
122044754 5273 Angiosperm View MSA
121345191 5274 Embryophyte View MSA
123424941 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.565        
cufflinks 6.887        
cufflinks 9.494        
cufflinks 10.289       High
cufflinks 8.736        
cufflinks 7.738        
cufflinks 6.647        
cufflinks 6.097        
cufflinks 7.159        
cufflinks 3.174       Low
cufflinks 6.495        
cufflinks 8.51        
cufflinks 10.128       High
cufflinks 6.445        
cufflinks 7.44        
cufflinks 9.115        
cufflinks 7.176        
cufflinks 12.713     High High
cufflinks 7.067        
cufflinks 7.391        

0 Strain