Gene : Seita.9G191800 S. italica v2.2
Defline:  (1 of 2) PTHR12358//PTHR12358:SF39 - SPHINGOSINE KINASE Genomic Order:  1918
Name:  ? Seita.9G191800 Secondary Identifier:  ? PAC:32693015
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5129 Setaria italica pathologic  
Sitalica PWY-6483 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G191800 0.5kb upstream 0.5kb upstream 8107 true scaffold_9: 13555733-13563839 Setaria italica
Seita.9G191800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 13563340-13563839 Setaria italica
Seita.9G191800 0.5kb downstream 0.5kb downstream 8107 true scaffold_9: 13555233-13563339 Setaria italica
Seita.9G191800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 13555233-13555732 Setaria italica
Seita.9G191800 1.0kb upstream 1.0kb upstream 8607 true scaffold_9: 13555733-13564339 Setaria italica
Seita.9G191800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 13563340-13564339 Setaria italica
Seita.9G191800 1.0kb downstream 1.0kb downstream 8607 true scaffold_9: 13554733-13563339 Setaria italica
Seita.9G191800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 13554733-13555732 Setaria italica
Seita.9G191800 2.0kb upstream 2.0kb upstream 9607 true scaffold_9: 13555733-13565339 Setaria italica
Seita.9G191800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 13563340-13565339 Setaria italica
Seita.9G191800 2.0kb downstream 2.0kb downstream 9607 true scaffold_9: 13553733-13563339 Setaria italica
Seita.9G191800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 13553733-13555732 Setaria italica
Seita.9G191800 5.0kb upstream 5.0kb upstream 12607 true scaffold_9: 13555733-13568339 Setaria italica
Seita.9G191800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 13563340-13568339 Setaria italica
Seita.9G191800 5.0kb downstream 5.0kb downstream 12607 true scaffold_9: 13550733-13563339 Setaria italica
Seita.9G191800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 13550733-13555732 Setaria italica
Seita.9G191800 10.0kb upstream 10.0kb upstream 17607 true scaffold_9: 13555733-13573339 Setaria italica
Seita.9G191800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 13563340-13573339 Setaria italica
Seita.9G191800 10.0kb downstream 10.0kb downstream 17607 true scaffold_9: 13545733-13563339 Setaria italica
Seita.9G191800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 13545733-13555732 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187978 5267 Panicoideae View MSA
124577757 5269 Grass View MSA
122046814 5273 Angiosperm View MSA
121349004 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.887     High  
cufflinks 19.808     High Low
cufflinks 35.077     High High
cufflinks 30.741     High  
cufflinks 24.498     High  
cufflinks 21.955     High  
cufflinks 24.848     High  
cufflinks 17.434     High Low
cufflinks 17.813     High Low
cufflinks 15.518       Low
cufflinks 21.719     High  
cufflinks 33.184     High  
cufflinks 34.773     High High
cufflinks 23.811     High  
cufflinks 30.542     High  
cufflinks 34.31     High High
cufflinks 25.428     High  
cufflinks 43.877     High High
cufflinks 26.324     High  
cufflinks 25.316     High  

0 Strain