Gene : Seita.9G190000 S. italica v2.2
Defline:  (1 of 2) PTHR15371//PTHR15371:SF6 - TIM23 Genomic Order:  1900
Name:  ? Seita.9G190000 Secondary Identifier:  ? PAC:32688009
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G190000 0.5kb upstream 0.5kb upstream 1772 true scaffold_9: 13332175-13333946 Setaria italica
Seita.9G190000 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 13332175-13332674 Setaria italica
Seita.9G190000 0.5kb downstream 0.5kb downstream 1772 true scaffold_9: 13332675-13334446 Setaria italica
Seita.9G190000 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 13333947-13334446 Setaria italica
Seita.9G190000 1.0kb upstream 1.0kb upstream 2272 true scaffold_9: 13331675-13333946 Setaria italica
Seita.9G190000 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 13331675-13332674 Setaria italica
Seita.9G190000 1.0kb downstream 1.0kb downstream 2272 true scaffold_9: 13332675-13334946 Setaria italica
Seita.9G190000 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 13333947-13334946 Setaria italica
Seita.9G190000 2.0kb upstream 2.0kb upstream 3272 true scaffold_9: 13330675-13333946 Setaria italica
Seita.9G190000 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 13330675-13332674 Setaria italica
Seita.9G190000 2.0kb downstream 2.0kb downstream 3272 true scaffold_9: 13332675-13335946 Setaria italica
Seita.9G190000 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 13333947-13335946 Setaria italica
Seita.9G190000 5.0kb upstream 5.0kb upstream 6272 true scaffold_9: 13327675-13333946 Setaria italica
Seita.9G190000 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 13327675-13332674 Setaria italica
Seita.9G190000 5.0kb downstream 5.0kb downstream 6272 true scaffold_9: 13332675-13338946 Setaria italica
Seita.9G190000 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 13333947-13338946 Setaria italica
Seita.9G190000 10.0kb upstream 10.0kb upstream 11272 true scaffold_9: 13322675-13333946 Setaria italica
Seita.9G190000 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 13322675-13332674 Setaria italica
Seita.9G190000 10.0kb downstream 10.0kb downstream 11272 true scaffold_9: 13332675-13343946 Setaria italica
Seita.9G190000 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 13333947-13343946 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177167 5267 Panicoideae View MSA
124569489 5269 Grass View MSA
122045727 5273 Angiosperm View MSA
121349022 5274 Embryophyte View MSA
123425450 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.398        
cufflinks 4.511        
cufflinks 3.456        
cufflinks 2.975        
cufflinks 3.143        
cufflinks 4.588        
cufflinks 3.201        
cufflinks 3.484        
cufflinks 2.487       Low
cufflinks 14.542       High
cufflinks 4.633        
cufflinks 5.86        
cufflinks 4.044        
cufflinks 7.672       High
cufflinks 3.932        
cufflinks 5.544        
cufflinks 5.466        
cufflinks 8.919       High
cufflinks 2.483       Low
cufflinks 4.408        

0 Strain