Gene : Seita.9G196900 S. italica v2.2
Defline:  (1 of 1) KOG4054 - Uncharacterized conserved protein Genomic Order:  1969
Name:  ? Seita.9G196900 Secondary Identifier:  ? PAC:32693628
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G196900 0.5kb upstream 0.5kb upstream 3610 true scaffold_9: 14067134-14070743 Setaria italica
Seita.9G196900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 14070244-14070743 Setaria italica
Seita.9G196900 0.5kb downstream 0.5kb downstream 3610 true scaffold_9: 14066634-14070243 Setaria italica
Seita.9G196900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 14066634-14067133 Setaria italica
Seita.9G196900 1.0kb upstream 1.0kb upstream 4110 true scaffold_9: 14067134-14071243 Setaria italica
Seita.9G196900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 14070244-14071243 Setaria italica
Seita.9G196900 1.0kb downstream 1.0kb downstream 4110 true scaffold_9: 14066134-14070243 Setaria italica
Seita.9G196900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 14066134-14067133 Setaria italica
Seita.9G196900 2.0kb upstream 2.0kb upstream 5110 true scaffold_9: 14067134-14072243 Setaria italica
Seita.9G196900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 14070244-14072243 Setaria italica
Seita.9G196900 2.0kb downstream 2.0kb downstream 5110 true scaffold_9: 14065134-14070243 Setaria italica
Seita.9G196900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 14065134-14067133 Setaria italica
Seita.9G196900 5.0kb upstream 5.0kb upstream 8110 true scaffold_9: 14067134-14075243 Setaria italica
Seita.9G196900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 14070244-14075243 Setaria italica
Seita.9G196900 5.0kb downstream 5.0kb downstream 8110 true scaffold_9: 14062134-14070243 Setaria italica
Seita.9G196900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 14062134-14067133 Setaria italica
Seita.9G196900 10.0kb upstream 10.0kb upstream 13110 true scaffold_9: 14067134-14080243 Setaria italica
Seita.9G196900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 14070244-14080243 Setaria italica
Seita.9G196900 10.0kb downstream 10.0kb downstream 13110 true scaffold_9: 14057134-14070243 Setaria italica
Seita.9G196900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 14057134-14067133 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177054 5267 Panicoideae View MSA
124576160 5269 Grass View MSA
122045382 5273 Angiosperm View MSA
121344737 5274 Embryophyte View MSA
123427393 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.006        
cufflinks 8.056       High
cufflinks 4.232       Low
cufflinks 6.13        
cufflinks 4.644        
cufflinks 7.361        
cufflinks 3.809       Low
cufflinks 6.929        
cufflinks 4.809        
cufflinks 12.31       High
cufflinks 5.811        
cufflinks 6.105        
cufflinks 6.997        
cufflinks 5.342        
cufflinks 5.506        
cufflinks 4.774        
cufflinks 7.683        
cufflinks 3.589       Low
cufflinks 4.264       Low
cufflinks 7.169        

0 Strain