Gene : Seita.9G198500 S. italica v2.2
Defline:  (1 of 5) 6.1.1.9 - Valine--tRNA ligase / Valyl-tRNA synthetase Genomic Order:  1985
Name:  ? Seita.9G198500 Secondary Identifier:  ? PAC:32691004
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRNA-CHARGING-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G198500 0.5kb upstream 0.5kb upstream 8421 true scaffold_9: 14185252-14193672 Setaria italica
Seita.9G198500 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 14193173-14193672 Setaria italica
Seita.9G198500 0.5kb downstream 0.5kb downstream 8421 true scaffold_9: 14184752-14193172 Setaria italica
Seita.9G198500 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 14184752-14185251 Setaria italica
Seita.9G198500 1.0kb upstream 1.0kb upstream 8921 true scaffold_9: 14185252-14194172 Setaria italica
Seita.9G198500 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 14193173-14194172 Setaria italica
Seita.9G198500 1.0kb downstream 1.0kb downstream 8921 true scaffold_9: 14184252-14193172 Setaria italica
Seita.9G198500 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 14184252-14185251 Setaria italica
Seita.9G198500 2.0kb upstream 2.0kb upstream 9921 true scaffold_9: 14185252-14195172 Setaria italica
Seita.9G198500 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 14193173-14195172 Setaria italica
Seita.9G198500 2.0kb downstream 2.0kb downstream 9921 true scaffold_9: 14183252-14193172 Setaria italica
Seita.9G198500 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 14183252-14185251 Setaria italica
Seita.9G198500 5.0kb upstream 5.0kb upstream 12921 true scaffold_9: 14185252-14198172 Setaria italica
Seita.9G198500 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 14193173-14198172 Setaria italica
Seita.9G198500 5.0kb downstream 5.0kb downstream 12921 true scaffold_9: 14180252-14193172 Setaria italica
Seita.9G198500 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 14180252-14185251 Setaria italica
Seita.9G198500 10.0kb upstream 10.0kb upstream 17921 true scaffold_9: 14185252-14203172 Setaria italica
Seita.9G198500 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 14193173-14203172 Setaria italica
Seita.9G198500 10.0kb downstream 10.0kb downstream 17921 true scaffold_9: 14175252-14193172 Setaria italica
Seita.9G198500 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 14175252-14185251 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191584 5267 Panicoideae View MSA
124590006 5269 Grass View MSA
122045228 5273 Angiosperm View MSA
121348805 5274 Embryophyte View MSA
123424302 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.448        
cufflinks 4.695        
cufflinks 4.424        
cufflinks 3.023        
cufflinks 2.609       Low
cufflinks 3.227        
cufflinks 3.653        
cufflinks 2.629       Low
cufflinks 2.981       Low
cufflinks 4.741        
cufflinks 8.086       High
cufflinks 9.311       High
cufflinks 4.682        
cufflinks 4.837        
cufflinks 4.473        
cufflinks 4.415        
cufflinks 3.431        
cufflinks 7.125       High
cufflinks 3.537        
cufflinks 3.52        

0 Strain