Gene : Seita.9G197400 S. italica v2.2
Defline:  (1 of 8) PF04859 - Plant protein of unknown function (DUF641) (DUF641) Genomic Order:  1974
Name:  ? Seita.9G197400 Secondary Identifier:  ? PAC:32690612
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G197400 0.5kb upstream 0.5kb upstream 1910 true scaffold_9: 14123927-14125836 Setaria italica
Seita.9G197400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 14125337-14125836 Setaria italica
Seita.9G197400 0.5kb downstream 0.5kb downstream 1910 true scaffold_9: 14123427-14125336 Setaria italica
Seita.9G197400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 14123427-14123926 Setaria italica
Seita.9G197400 1.0kb upstream 1.0kb upstream 2410 true scaffold_9: 14123927-14126336 Setaria italica
Seita.9G197400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 14125337-14126336 Setaria italica
Seita.9G197400 1.0kb downstream 1.0kb downstream 2410 true scaffold_9: 14122927-14125336 Setaria italica
Seita.9G197400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 14122927-14123926 Setaria italica
Seita.9G197400 2.0kb upstream 2.0kb upstream 3410 true scaffold_9: 14123927-14127336 Setaria italica
Seita.9G197400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 14125337-14127336 Setaria italica
Seita.9G197400 2.0kb downstream 2.0kb downstream 3410 true scaffold_9: 14121927-14125336 Setaria italica
Seita.9G197400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 14121927-14123926 Setaria italica
Seita.9G197400 5.0kb upstream 5.0kb upstream 6410 true scaffold_9: 14123927-14130336 Setaria italica
Seita.9G197400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 14125337-14130336 Setaria italica
Seita.9G197400 5.0kb downstream 5.0kb downstream 6410 true scaffold_9: 14118927-14125336 Setaria italica
Seita.9G197400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 14118927-14123926 Setaria italica
Seita.9G197400 10.0kb upstream 10.0kb upstream 11410 true scaffold_9: 14123927-14135336 Setaria italica
Seita.9G197400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 14125337-14135336 Setaria italica
Seita.9G197400 10.0kb downstream 10.0kb downstream 11410 true scaffold_9: 14113927-14125336 Setaria italica
Seita.9G197400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 14113927-14123926 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041512 5273 Angiosperm View MSA
122175394 5267 Panicoideae View MSA
124578627 5269 Grass View MSA
121351569 5274 Embryophyte View MSA
123382231 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.472        
cufflinks 14.121     High High
cufflinks 6.034        
cufflinks 4.701        
cufflinks 3.097       Low
cufflinks 14.811     High High
cufflinks 7.764        
cufflinks 8.711        
cufflinks 3.976       Low
cufflinks 10.529        
cufflinks 12.398        
cufflinks 8.551        
cufflinks 12.894       High
cufflinks 5.837        
cufflinks 11.352        
cufflinks 4.309       Low
cufflinks 13.192       High
cufflinks 3.216       Low
cufflinks 4.289       Low
cufflinks 10.975        

0 Strain