Gene : Seita.9G301300 S. italica v2.2
Defline:  (1 of 2) PTHR23077:SF27 - SPERMATOGENESIS-ASSOCIATED PROTEIN 5 Genomic Order:  3013
Name:  ? Seita.9G301300 Secondary Identifier:  ? PAC:32687923
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G301300 0.5kb upstream 0.5kb upstream 6021 true scaffold_9: 34870276-34876296 Setaria italica
Seita.9G301300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 34875797-34876296 Setaria italica
Seita.9G301300 0.5kb downstream 0.5kb downstream 6021 true scaffold_9: 34869776-34875796 Setaria italica
Seita.9G301300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 34869776-34870275 Setaria italica
Seita.9G301300 1.0kb upstream 1.0kb upstream 6521 true scaffold_9: 34870276-34876796 Setaria italica
Seita.9G301300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 34875797-34876796 Setaria italica
Seita.9G301300 1.0kb downstream 1.0kb downstream 6521 true scaffold_9: 34869276-34875796 Setaria italica
Seita.9G301300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 34869276-34870275 Setaria italica
Seita.9G301300 2.0kb upstream 2.0kb upstream 7521 true scaffold_9: 34870276-34877796 Setaria italica
Seita.9G301300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 34875797-34877796 Setaria italica
Seita.9G301300 2.0kb downstream 2.0kb downstream 7521 true scaffold_9: 34868276-34875796 Setaria italica
Seita.9G301300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 34868276-34870275 Setaria italica
Seita.9G301300 5.0kb upstream 5.0kb upstream 10521 true scaffold_9: 34870276-34880796 Setaria italica
Seita.9G301300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 34875797-34880796 Setaria italica
Seita.9G301300 5.0kb downstream 5.0kb downstream 10521 true scaffold_9: 34865276-34875796 Setaria italica
Seita.9G301300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 34865276-34870275 Setaria italica
Seita.9G301300 10.0kb upstream 10.0kb upstream 15521 true scaffold_9: 34870276-34885796 Setaria italica
Seita.9G301300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 34875797-34885796 Setaria italica
Seita.9G301300 10.0kb downstream 10.0kb downstream 15521 true scaffold_9: 34860276-34875796 Setaria italica
Seita.9G301300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 34860276-34870275 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198382 5267 Panicoideae View MSA
124573326 5269 Grass View MSA
122041889 5273 Angiosperm View MSA
121345411 5274 Embryophyte View MSA
123426108 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.43       High
cufflinks 2.405       High
cufflinks 1.308        
cufflinks 1.151       Low
cufflinks 1.067       Low
cufflinks 2.249        
cufflinks 2.041        
cufflinks 1.748        
cufflinks 1.471        
cufflinks 1.303        
cufflinks 1.956        
cufflinks 1.759        
cufflinks 1.752        
cufflinks 1.352        
cufflinks 1.933        
cufflinks 2.819       High
cufflinks 1.902        
cufflinks 2.009        
cufflinks 0.927       Low
cufflinks 1.611        

0 Strain