Gene : Seita.9G303400 S. italica v2.2
Defline:  (1 of 11) PF00069//PF00954//PF01453 - Protein kinase domain (Pkinase) // S-locus glycoprotein domain (S_locus_glycop) // D-mannose binding lectin (B_lectin) Genomic Order:  3034
Name:  ? Seita.9G303400 Secondary Identifier:  ? PAC:32689222
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G303400 0.5kb upstream 0.5kb upstream 4038 true scaffold_9: 35117527-35121564 Setaria italica
Seita.9G303400 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 35121065-35121564 Setaria italica
Seita.9G303400 0.5kb downstream 0.5kb downstream 4038 true scaffold_9: 35117027-35121064 Setaria italica
Seita.9G303400 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 35117027-35117526 Setaria italica
Seita.9G303400 1.0kb upstream 1.0kb upstream 4538 true scaffold_9: 35117527-35122064 Setaria italica
Seita.9G303400 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 35121065-35122064 Setaria italica
Seita.9G303400 1.0kb downstream 1.0kb downstream 4538 true scaffold_9: 35116527-35121064 Setaria italica
Seita.9G303400 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 35116527-35117526 Setaria italica
Seita.9G303400 2.0kb upstream 2.0kb upstream 5538 true scaffold_9: 35117527-35123064 Setaria italica
Seita.9G303400 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 35121065-35123064 Setaria italica
Seita.9G303400 2.0kb downstream 2.0kb downstream 5538 true scaffold_9: 35115527-35121064 Setaria italica
Seita.9G303400 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 35115527-35117526 Setaria italica
Seita.9G303400 5.0kb upstream 5.0kb upstream 8538 true scaffold_9: 35117527-35126064 Setaria italica
Seita.9G303400 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 35121065-35126064 Setaria italica
Seita.9G303400 5.0kb downstream 5.0kb downstream 8538 true scaffold_9: 35112527-35121064 Setaria italica
Seita.9G303400 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 35112527-35117526 Setaria italica
Seita.9G303400 10.0kb upstream 10.0kb upstream 13538 true scaffold_9: 35117527-35131064 Setaria italica
Seita.9G303400 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 35121065-35131064 Setaria italica
Seita.9G303400 10.0kb downstream 10.0kb downstream 13538 true scaffold_9: 35107527-35121064 Setaria italica
Seita.9G303400 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 35107527-35117526 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177352 5267 Panicoideae View MSA
124571264 5269 Grass View MSA
122048307 5273 Angiosperm View MSA
121310924 5274 Embryophyte View MSA
123348296 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.782        
cufflinks 4.247       Low
cufflinks 8.566        
cufflinks 12.084     High  
cufflinks 9.973        
cufflinks 4.819       Low
cufflinks 8.725        
cufflinks 6.478        
cufflinks 3.709       Low
cufflinks 16.046     High High
cufflinks 10.42        
cufflinks 7.819        
cufflinks 11.172        
cufflinks 17.927     High High
cufflinks 6.892        
cufflinks 9.913        
cufflinks 8.377        
cufflinks 7.835        
cufflinks 10.748        
cufflinks 8.425        

0 Strain