Gene : Seita.9G308800 S. italica v2.2
Defline:  (1 of 1) PTHR31394:SF1 - TRANSMEMBRANE PROTEIN 199 Genomic Order:  3088
Name:  ? Seita.9G308800 Secondary Identifier:  ? PAC:32687778
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G308800 0.5kb upstream 0.5kb upstream 2849 true scaffold_9: 35638401-35641249 Setaria italica
Seita.9G308800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 35638401-35638900 Setaria italica
Seita.9G308800 0.5kb downstream 0.5kb downstream 2849 true scaffold_9: 35638901-35641749 Setaria italica
Seita.9G308800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 35641250-35641749 Setaria italica
Seita.9G308800 1.0kb upstream 1.0kb upstream 3349 true scaffold_9: 35637901-35641249 Setaria italica
Seita.9G308800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 35637901-35638900 Setaria italica
Seita.9G308800 1.0kb downstream 1.0kb downstream 3349 true scaffold_9: 35638901-35642249 Setaria italica
Seita.9G308800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 35641250-35642249 Setaria italica
Seita.9G308800 2.0kb upstream 2.0kb upstream 4349 true scaffold_9: 35636901-35641249 Setaria italica
Seita.9G308800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 35636901-35638900 Setaria italica
Seita.9G308800 2.0kb downstream 2.0kb downstream 4349 true scaffold_9: 35638901-35643249 Setaria italica
Seita.9G308800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 35641250-35643249 Setaria italica
Seita.9G308800 5.0kb upstream 5.0kb upstream 7349 true scaffold_9: 35633901-35641249 Setaria italica
Seita.9G308800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 35633901-35638900 Setaria italica
Seita.9G308800 5.0kb downstream 5.0kb downstream 7349 true scaffold_9: 35638901-35646249 Setaria italica
Seita.9G308800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 35641250-35646249 Setaria italica
Seita.9G308800 10.0kb upstream 10.0kb upstream 12349 true scaffold_9: 35628901-35641249 Setaria italica
Seita.9G308800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 35628901-35638900 Setaria italica
Seita.9G308800 10.0kb downstream 10.0kb downstream 12349 true scaffold_9: 35638901-35651249 Setaria italica
Seita.9G308800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 35641250-35651249 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182793 5267 Panicoideae View MSA
124577249 5269 Grass View MSA
122047904 5273 Angiosperm View MSA
121346393 5274 Embryophyte View MSA
123426086 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.462       Low
cufflinks 7.967        
cufflinks 6.819        
cufflinks 6.368        
cufflinks 5.326       Low
cufflinks 8.4        
cufflinks 6.104        
cufflinks 10.234       High
cufflinks 5.064       Low
cufflinks 8.588        
cufflinks 5.575        
cufflinks 9.734       High
cufflinks 8.365        
cufflinks 9.755       High
cufflinks 8.929        
cufflinks 5.326       Low
cufflinks 10.544       High
cufflinks 4.18       Low
cufflinks 7.507        
cufflinks 10.341       High

0 Strain